Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq92742 129 2e-25 seq111010 125 3e-24 seq14176 89.7 2e-13 >seq92742 Length=6105 Score = 129 bits (142), Expect = 2e-25 Identities = 223/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 13923 CGCTGTTCGCCTTCCTGACGGAGCTGACGCTGACGATCAACAACAACGTCTCGCCCAACA 13982 || ||||||| | ||| || || || | | ||||||||||||||||||| |||||||||| Sbjct 4644 CGTTGTTCGCTTACCTCACCGAACTCAAGATGACGATCAACAACAACGTGTCGCCCAACA 4585 Query 13983 AGGCGGTCGCTGTCCTCGGAGCCTTCGACGTTTCCGCGGGCACCTTCCAGGTGTCGGGC- 14041 |||| || || || || || ||||||||||| | || || | || | ||||| | | Sbjct 4584 AGGCCGTTGCGGTTCTTGGCGCCTTCGACGTGACGGCAGGTATTTTTGAAGTGTCTGCCG 4525 Query 14042 AACGTGACGGCCTACTTCGCGGACA-TCGCGGCGGTCCAGGCGGTGCGCAACAACTCGGA 14100 || ||| ||| ||||| | ||| ||| || |||||||| || ||||||||| | Sbjct 4524 AAGCTGA-GGCTTACTT-TAGCACAGTCGAAGCTGTCCAGGCCGTTCGCAACAACGCCAG 4467 Query 14101 CGTGACGCTGGACTTCGCCTTGGTGAAGAACAACGCCGGTCTGGTGTGGGACATCCCGCT 14160 || || | | ||| | || ||||||||| ||| | || |||||| || || Sbjct 4466 CGGTCAAATGTTCATGGCCGTTGTCAAGAACAACTATGGTTTCGTTATGGACATGCCTCT 4407 Query 14161 GCTCGCCCTGGGCGACGGACGCCTGAACGTGGAGCA-GGACCAGCCGATCACCCTGCCCC 14219 |||| || ||| ||| ||| ||||||| | || ||| || |||||| ||||| Sbjct 4406 TGTCGCTCTCGGCAACGCACGTTTGAACGT-CACCATTGACGAGGCGATCAAGCTGCCTT 4348 Query 14220 TGTCGGTGGACGCGGC 14235 || | | |||||||| Sbjct 4347 TGACACTTGACGCGGC 4332 >seq111010 Length=53734 Score = 125 bits (138), Expect = 3e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 33057 CTACCGCGAAGTGGACGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGACTG 33116 ||||||| | ||| |||| | | |||||||||| | |||||||| |||| ||| Sbjct 29671 CTACCGCAAGGTGCGCGCCTGTGAGCTGTGGGACCAGGTCATGCGCTCCACCTACGACCA 29730 Query 33117 GGCGGAGCCTGGGGTGCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTG 33176 || ||||| || ||||| ||| | ||| |||||| || |||||||| ||||| Sbjct 29731 CGCCGAGCCCGGCGTGCTCTTCCTGGACCGCATCAACAGCGACAACAACCTGCACTACTG 29790 Query 33177 CGAGACCATCGCCGCCACCAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTG 33236 |||||| ||||| || ||||| || |||| ||||||||||| |||||||| || ||| Sbjct 29791 CGAGACGATCGCGGCGACCAATCCTTGCGCCGAGCAACCGCTTCCGCCCTATGGCTGCTG 29850 Query 33237 CTTGTTGGGCTCCTTCAACTTG 33258 || |||||||| || || || Sbjct 29851 CTGCCTGGGCTCCATCGACCTG 29872 Score = 95.1 bits (104), Expect = 5e-15 Identities = 158/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 32638 ACGATGCGGATGGGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGTCCTCGCGGCGAC 32697 |||||||| |||||||| | ||||| ||||||||| | |||| || ||| | | Sbjct 29288 ACGATGCGCCGTGGCGGCGGCGTGGGCTACGACTTCAGCCGCATCCGCCCGGCCGGTG-C 29346 Query 32698 CTGATCCGCAAGCTCCAGTC----CCACTCCTCCGGCCCCATCAGCTTCATGCACATCTT 32753 ||| | |||||| | ||| ||||||| || ||||| | ||||| | | || Sbjct 29347 CTGGGTGG---GCTCCACGCGCAGCCATGCCTCCGGGCCGATCAGTTACATGCGCGTGTT 29403 Query 32754 CGACGCGATCTGCAAGTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCAGATGGGGGT 32813 |||| | ||| || || | | ||||| |||||||| || |||||||| || Sbjct 29404 CGACCGCAGTTGCGAGACGGTGGAGAGCGCCGGCAGCCGCCGCGGCGCGCAGATGGGCGT 29463 Query 32814 GATGCGCGTGGACCATCCCGACATCGAGGAGTTCATTCACGCCAAG 32859 | ||||| ||||| ||||||||||||| ||||| ||||||||| Sbjct 29464 GCTGCGCTGCGACCACCCCGACATCGAGGCCTTCATCCACGCCAAG 29509 >seq14176 Length=1367 Score = 89.7 bits (98), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 31579 CTCGCCCTGGGCGATCCGGGGCAGCTCCCGCCCGT---GGGCGGCACCCCCTTCTTCAAG 31635 |||| || |||||||| | ||||| ||||| || ||| ||| | |||| | || Sbjct 800 CTCGTGCTCGGCGATCCCGCCCAGCTGCCGCCGGTCAAGGGTGGCGGCTTCTTCACCGAG 741 Query 31636 AACAAGCCCGACATCCTGCTCACGGAGATTCACCGCCAGGCCCAGGACAACCCGATCATC 31695 | |||| ||| | |||| ||| || | || ||||||||| ||||| |||||| || Sbjct 740 GCCGAGCCGGACGTGATGCTGACGCAGGTGCATCGCCAGGCCGCCGACAATCCGATCGTC 681 Query 31696 TGGATGTCCAAGGAGGTCCGCGAGGGCCGCGTGCTCCGCCCCGGCGACTACGGTGCCAGC 31755 | ||||| | ||| ||||||||||||||| ||| | |||| ||| || | ||| Sbjct 680 CGCATGTCGATGGAAATCCGCGAGGGCCGCGCGCTTGACTACGGCACCTATGGCGAGAGC 621 Query 31756 CGCGTGAT 31763 ||||| || Sbjct 620 CGCGTCAT 613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198595006177766