Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq110395 127 5e-24 seq106734 122 2e-22 seq107974 111 4e-19 seq109771 100 7e-16 seq6868 93.3 1e-13 seq102539 89.7 1e-12 >seq110395 Length=10286 Score = 127 bits (140), Expect = 5e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||| ||||| || ||||| || |||| ||||||||||| | || | || ||||| | Sbjct 10191 CAAGATGGAGGGTCGATTCCTTCTGGATATTGTAATCGGAGAGCGTGCGGCCGTCTTCCA 10132 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 |||||| || || || || || || || ||||||||||| || ||||||||||| |||| Sbjct 10131 ACTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGA 10072 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || ||||||||||| || | || || || | ||||| ||||| | Sbjct 10071 TCTTAGCCTTGACGTTATCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTCC 10012 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || | || || | ||| | |||||| Sbjct 10011 CAGTGAGCGTCTTGACGAATATTTGCAT 9984 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||||| ||||| || || |||| ||||| |||| | || Sbjct 9976 CGAAGACGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTA 9917 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| || || |||||||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 9916 CGCCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCGGGGGGGATGCCT 9857 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || ||||| || ||| || |||||||| || || | ||| || || | Sbjct 9856 TCCTTATCCTGGATTTTGGCCTTAACGTTGTCGATGGTATCGGACGATTCGACCTCGAGG 9797 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | || || | ||| | ||||| Sbjct 9796 GTGATCGTCTTCCCAGTAAGCGTCTTAACGAAGATCTGCAT 9756 Score = 91.5 bits (100), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | |||||||||||| || || |||| ||||| || | | ||| Sbjct 9749 ACGAAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTARTCAGAAAGAGT 9690 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 | || || || |||||||| ||||||||||| || ||||| |||||||| || || Sbjct 9689 CCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGTTGCTGGTCGGGAGGGAT 9633 >seq106734 Length=403 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || || || ||||| || || |||| ||| || || | | || | ||| || || | | Sbjct 236 AGATGAAGGGTGGACTCCTTCTGGATATTATAGTCCGAGAGCGTGCGCCCGTCCTCCAAC 177 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| || |||||||||||||| || |||||||||||||| || ||| Sbjct 176 TGCTTGCCGGCGAAGATCAGACGTTGTTGGTCGGGGGGGATACCTTCCTTGTCCTGAATC 117 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||| ||||| || | || || || | |||||| ||||||||| Sbjct 116 TTGGCCTTGACGTTGTCGATAGTGTCCGAAGACTCTACCTCCAGCGTGATTGTCTTGCCC 57 Query 225688 GT 225689 || Sbjct 56 GT 55 >seq107974 Length=16430 Score = 111 bits (122), Expect = 4e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||||||||| |||||||||| || || || || ||||| || ||| Sbjct 9501 AGCACAAGGTGGAGAGTGGACTCTTTTTGGATGTTATAGTCACTCAGAGTTCGACCGTCT 9442 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATAC 225610 || |||||||| ||||||||||| || |||||||| ||||| ||||||| Sbjct 9441 TCGAGCTGCTTGCCAGCGAAGATGAGGCGTTGTTGATCGGGGGGAATAC 9393 >seq109771 Length=16137 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||||||||| || || |||| ||||| ||| | ||| | ||||| Sbjct 11260 CAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTAAGAGTGCGGCCATC 11201 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 ||| |||||||| || |||||||| ||||| |||||||| || ||||| Sbjct 11200 TTCAAGCTGCTTTCCTGCGAAGATGAGTCGCTGTTGGTCAGGAGGAAT 11153 >seq6868 Length=121 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || ||||| ||||| ||||||||||||||||| ||||| ||| Sbjct 120 CCGTCCTCGAGCTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCGGGCGGGATACCCTCC 61 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||||| || || |||||| || ||||| || || | ||||| || | ||| Sbjct 60 TTGTCTTGAATTTTGGCCTTCACGTTGTCAATGGTATCGGATGACTCCACCTCCAGCGT 2 >seq102539 Length=187 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | |||||| || || ||||| |||| ||||||||| | | ||| Sbjct 73 ACGAAGACGAAGAACCAAGTGGAGGGTAGACTCTTTCTGGATATTGTAATCCGAAAGAGT 132 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG 225605 || || || || ||||| || |||||||| || || ||||| ||||||||||| Sbjct 133 TCGGCCGTCCTCGAGCTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCGGGCGG 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190832125893494