Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq107681 235 5e-57 seq58313 127 2e-24 >seq107681 Length=5071 Score = 235 bits (260), Expect = 5e-57 Identities = 583/878 (66%), Gaps = 10/878 (1%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||||||||| || ||| | ||||| |||||||| |||||||||| || || || | Sbjct 4509 TTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCAT 4450 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 ||||||||||||||||| |||| |||| ||| ||| | | || | | | Sbjct 4449 CTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTAA 4390 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 | | |||||||| ||||| || || || |||||||| | || ||| || || ||||| Sbjct 4389 CCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATTAA 4330 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 || || | |||| || | ||| |||| ||| || ||| || || || || || Sbjct 4329 CGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATAAT 4270 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTAT-CCAAACAATAAACACGCAA 4554 | | | | ||| | ||||||| | | | || || | | | || |||| Sbjct 4269 TTTGGTAACTGCTTCTGTGCTCAGTTTATTCTCCA-GCATACCGTAAAGCAGGCAGGCAA 4211 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 | || || || ||||||| || | || | |||||||||||| ||| || ||||||||| Sbjct 4210 ATTCGCAGTGTGAACCTTCATCGC-GCGATATCAGTTCGTTACTAAAGGTCAATCCGGGC 4152 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || | || | ||||| | ||| || |||| || ||| |||||||| |||||| Sbjct 4151 ATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAAGAAAATGCCT 4092 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733 || || || ||||| ||||| || || | || || || | ||| || ||||| Sbjct 4091 TCAACAGCCGCAAATGCTACCAAACG---CTCGGCAAAGGTGCCGTTG---TTGATCCAG 4038 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT 4793 | ||||| | || || || | || || ||||| || | | |||| || || Sbjct 4037 CGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGGAACAAA 3978 Query 4794 TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 | |||||||| ||||||| ||| ||||| ||||| ||||| || | || || Sbjct 3977 CGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTCTCTGAG 3918 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 || || || || || |||||||| ||||||||||| | ||||| | || ||| || Sbjct 3917 TGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAATTGCACC 3858 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 ||| | || | | | | ||||||||| || ||||| || ||||| |||||||| Sbjct 3857 TCGCTCATGAAGTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCGGCAAAAAAA 3798 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 |||| | || || || || | | ||| | || || | || ||| || || Sbjct 3797 GCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGGGTTCATGGCTTCCCAATGTTTCAGG 3738 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 || | | | |||| |||||| | |||||||| ||||||| |||||| ||||| Sbjct 3737 TCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATTTTTTATACATC 3678 Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||||||| |||| || | || |||||||| ||||| Sbjct 3677 TCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAA 3640 >seq58313 Length=1260 Score = 127 bits (140), Expect = 2e-24 Identities = 385/583 (66%), Gaps = 20/583 (3%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||||||||| ||| || || || || || || || |||||||| | || ||| || | Sbjct 619 TTTTTGGTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCCCTGTAGCGATATCAT 560 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||||||||||||||||| | ||| ||| ||| | | || | | || Sbjct 559 CTCCATAAAATCAAACGGATTTGATGCACCGTATACTTTCGGATAGCCCAGTTCGCCCAG 500 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 | ||| ||| |||||||| || |||||||| ||||| |||| | ||| || || ||||| Sbjct 499 CCATCTGTCGGCTACAAACTCAATATACTGACTCATCAGTTTGGCGTTCATACCTATTAA 440 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 || || ||||||| | | ||| || | |||||| ||| || ||| | || || Sbjct 439 CGATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTATCTCTACCGCGTCTTTAATAAT 380 Query 4496 ATCTTTTATTTTATCTTTAGATG----GTTTATTTACTAAGTAT-CCAAACAATAAACAC 4550 ||| | | | || || | || ||| | || || | ||| | || Sbjct 379 ---TTTGGTGACCGCCTCAG-TGCTCAGCTTGTTTTC-CAGCATGCTGTACAGCAGGCAG 325 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCC 4609 ||||| || || ||| ||||||| || | || | ||||| |||||| || || | || Sbjct 324 GCAAATTCGCAGTGCGAACCTTCATCGC-GCGATATCAGCTCGTTACTGAAAGTCAGCCC 266 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCG-GCAAATGACCCAGAAAAGAATA 4668 ||||| || || | ||||| ||||| || |||| | ||| |||| |||||||| | Sbjct 265 TGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAGAGCAGAAACTACCC-GAAAAGAAGA 207 Query 4669 TGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAA 4728 ||||||| || || ||||| || || || || | || || || | ||| || | Sbjct 206 TGCCTTCAACCGCAGCAAATGCCACCAAACG---CTCGGCAAAGTTGCCGTTG---TTGA 153 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| | ||||| | ||||| |||| || || || || |||| ||||||| | Sbjct 152 TCCAGCGCAGCGCCCATTCGGCTTTCTTCTGCACACATGGTATGGTGTCGATAGCGTGGA 93 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTAT 4831 | || | ||||| ||||||| | |||||||| || Sbjct 92 ACAACCGATCCTTTTCGGCCGGGTCTTTTACGTAAGTGTCGAT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426470835824933