Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq107811 154 2e-32 seq15205 111 2e-19 seq71830 105 1e-17 >seq107811 Length=6275 Score = 154 bits (170), Expect = 2e-32 Identities = 225/316 (71%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 || || || || || ||||| || ||||| ||| | ||| | || ||||||||||||||| Sbjct 4409 CTCTCGTGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCGTTCAATATC 4350 Query 100227 GCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGAC 100286 || |||||||| |||||| |||||| | || || || || | | |||||||||| Sbjct 4349 GCCTCGTACGCGCTGCTGACGCACATGATGGCGCAGCAGGCAGGTCTCGACGTGGGCGAC 4290 Query 100287 TTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAG--ACACGTA 100344 ||||||||||| || |||||| || || ||||| ||||| |||| ||| ||| | Sbjct 4289 TTCGTCTGGACCGGCGGTGACTGCCACCTCTATTCGAACCACATGGAGCAGGTCGACGAA 4230 Query 100345 CTCAGCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACT 100404 ||||| | ||| | |||| | | || || | || ||||| || ||||| ||| Sbjct 4229 --CAGCTCGCGCGCGCCCCGCTGCCGCTGCCCAAGCTCGTCATCAAGCGCAAGCCGGACA 4172 Query 100405 CTATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCA 100464 | | |||||||| | || || ||||||||||| | | ||||| | | | | || Sbjct 4171 CGCTGTTCGACTACACCTTCGACGACTTCGAGATCGTCGGCTACGCGTCGCATGCGCACA 4112 Query 100465 TTAAAGCGCCGGTGGC 100480 | || ||||||||||| Sbjct 4111 TCAAGGCGCCGGTGGC 4096 >seq15205 Length=1481 Score = 111 bits (122), Expect = 2e-19 Identities = 221/321 (69%), Gaps = 6/321 (2%) Strand=Plus/Minus Query 100170 TCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCGCG 100229 ||||| || |||||||| || ||||| ||| | ||| | || ||||| ||||| ||||| Sbjct 1481 TCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCTTTCAACATCGCC 1422 Query 100230 TCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGACTTC 100289 || || |||||| ||| | || || || | || || | ||||||||| Sbjct 1421 AGCTATGCGCTGCTGACAATGATGCTGGCCCAGCAGTGCGACCTGCAACTCGGCGACTTC 1362 Query 100290 GTCTGGACGGGTGGTGAC-GT-ACATCTGTATTCCAACCATCTGGAACAGACACGTACTC 100347 |||||||||| || ||| || |||||| | |||||| |||| ||| | || | Sbjct 1361 ATCTGGACGGGCGGCGACTGTCACATCT--ACGACAACCACGTGGAGCAGGTGCAGACCC 1304 Query 100348 AGCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTCTA 100407 |||| | ||| || || | | || | || | ||||| || ||| | || | Sbjct 1303 AGCTCGCCCGCGAGCCACGACCCTACCCGACCATGCTGATCAAACGCCGGCCGGCGTCGA 1244 Query 100408 TCTTCGACTATAAGTTTGAAGACTTCGAGATTGAG-GACTACGAGCCTTACCCCGCCATT 100466 |||||||||| ||| || ||||||||| |||| | ||||||||| | || ||||| Sbjct 1243 TCTTCGACTACGAGTACGAGGACTTCGAG-CTGAGCGGCTACGAGCCGCATCCGGCCATC 1185 Query 100467 AAAGCGCCGGTGGCGATATGA 100487 ||||| |||||||| ||||| Sbjct 1184 AAAGCCCCGGTGGCCGTATGA 1164 >seq71830 Length=566 Score = 105 bits (116), Expect = 1e-17 Identities = 175/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 99524 CGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGC 99583 ||||||||| ||||| || || | | ||||||| | ||||||||||||||||| Sbjct 221 CGACCGTACCGGCACCGGCACCATTAGTGTGTTTGGCTACCAAATGCGTTTTAATTTAAA 280 Query 99584 TGAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCATGAAC 99642 || ||||| || ||||| || || || |||| ||| | || || || || || Sbjct 281 AGACGGTTTCCCGCTGGTGACGACCAAAAAGCTG-CACTTGAAATCGATCATCCACGAGT 339 Query 99643 TCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTA 99702 | | ||||| ||| || |||||||||| | | ||||| |||||||||||||| | | Sbjct 340 TGATCTGGTTTTTGAGCGGTGATACCAATATCAAATACCTAAAAGATAACGGCGTAAAAA 399 Query 99703 TCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGC 99762 | ||| | ||||||| | | | || || | || ||||| || || | || |||| Sbjct 400 TTTGGGACGAGTGGGCCGATGCCGATGGCAACCTCGGGCCGGTGTATGGGTACCAATGGC 459 Query 99763 GGTCTTGGCC 99772 |||| ||||| Sbjct 460 GGTCGTGGCC 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 733254548293560