Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq108213 194 5e-45 seq37734 132 2e-26 seq56696 131 5e-26 seq108967 125 2e-24 seq67610 91.5 5e-14 seq83405 82.4 2e-11 >seq108213 Length=2622 Score = 194 bits (214), Expect = 5e-45 Identities = 275/380 (72%), Gaps = 14/380 (4%) Strand=Plus/Minus Query 40035 TCCAGCACGCGCGCCG-CGTCCTTCATCGCG---TTGCGCGCCTTGATCCGACCGAAGGT 40090 || |||||||| |||| |||| |||||| ||| |||| ||| ||||||||| Sbjct 1850 TCGAGCACGCG-GCCGACGTCGCGGATCGCGCCCTTGGCCGCC---ATCGTACCGAAGGT 1795 Query 40091 CCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACG---TC 40147 ||||||| | |||| |||| |||||| || | |||| | ||||||| || Sbjct 1794 GGCGATCTGCGAGACCGCGTCCTTGCCGTACAAATCCTTCACGTGCTGGATCACGCGGTC 1735 Query 40148 GCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTT 40207 || || | | || || |||||||||||| | ||||||||| |||||||| ||||| || Sbjct 1734 GCGCCCTTCCTGG-CA--GAAGTCGATGTCGAAGTCGGGCATCGACACGCGTTCGGGATT 1678 Query 40208 CAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCA 40267 ||||| |||||||| | || || | ||| || || ||||| ||||| || | Sbjct 1677 GAGGAAGCGCTCGAACAGCAGATTGTACTGGAGCGGATCGAGGTCGGTGATCAGCAGCGA 1618 Query 40268 GTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTC 40327 |||||| |||||||||||||| |||| ||||| || || || ||| ||| || ||||| Sbjct 1617 GTAGGCCACCAGCGAACCGGCGCCCGAACCACGGCCCGGCCCCACCGGCACACCATTCTC 1558 Query 40328 CTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGAT 40387 ||||||||| |||||| ||||| |||| |||||||||| ||||| || | Sbjct 1557 CTTGGCCCACTTGATGAATTCGGCCACGATCAGGAAGTAGCCGGGGAATTTCATATTACA 1498 Query 40388 GATCATGTCGATCTCGTACT 40407 |||| ||||| ||||| ||| Sbjct 1497 GATCGTGTCGGTCTCGAACT 1478 >seq37734 Length=186 Score = 132 bits (146), Expect = 2e-26 Identities = 142/185 (77%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 40184 GGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGG 40243 |||||||||||| ||||| ||||||||||| ||||| || | || || | | || Sbjct 1 GGGCATGGACACCCGCTCCGGGTTCAGGAAGCGCTCAAACAGCAGGTTGTAGCGCAGCGG 60 Query 40244 GTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTC 40302 ||||||||| ||||| || ||| |||||||||||||| |||||| | ||||| || | Sbjct 61 GTCCAGGTCCGTGATCAGCAGCGCA-TAGGCGACCAGCGAGCCGGCACCGGAGCCCCGGC 119 Query 40303 CGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGA 40362 | || ||||| |||||| |||||||||||| ||||||||| | |||| ||||| Sbjct 120 CCGGGCCGACAGGGCAGCCGTTTGCCTTGGCCCAGCGGATGAAGTCCGACACGATCAGGA 179 Query 40363 AGTAG 40367 ||||| Sbjct 180 AGTAG 184 >seq56696 Length=1533 Score = 131 bits (144), Expect = 5e-26 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 40184 GGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGG 40243 |||||||||||| ||||| |||||||||||||| ||||| | | | || | | | || Sbjct 1533 GGGCATGGACACCCGCTCCGGGTTCAGGAACCGTTCGAACAGCAACTTGTACTGCAGCGG 1474 Query 40244 GTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTC 40302 ||||||||| || || || ||| || || ||||||||||||||| | ||||| || | Sbjct 1473 GTCCAGGTCGGTAATCTTCAGCGCA-TAAGCCACCAGCGAACCGGCACCAGAGCCCCGGC 1415 Query 40303 CGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGA 40362 | || || ||| ||| || |||||||||| ||||||||| | |||| || || Sbjct 1414 CTGGCCCCACCGGGCAGCCATTGAGCTTGGCCCAGTTGATGAAGTCCCCCACGATCAAGA 1355 Query 40363 AGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCT 40416 ||||| |||||| |||| || | ||| || ||||||| | | ||| ||| Sbjct 1354 AGTAGCCCGGGAAGCCCATCTTCAGGATGGTGGTGATCTCGAATTCCAGCCGCT 1301 >seq108967 Length=4619 Score = 125 bits (138), Expect = 2e-24 Identities = 237/344 (69%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 40027 AGGGCTTGTCCAGCACGCGCGCCG-CGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCG 40085 ||||| | | || ||||| |||| |||| || | || |||||||| || | ||| Sbjct 4279 AGGGCATCTGCAAAACGCG-GCCGACGTCGCGCAGCACGGCGCGCGCCTGGAGCGTTCCG 4337 Query 40086 AAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACG 40145 || || |||||| || |||| || || || || || |||||| | || || Sbjct 4338 AAAGTAATGATCTGCGCAACCTGATCGCGGCCATATTTTTCCTGGACGTAGCGAATAACC 4397 Query 40146 TCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGG 40203 ||| | || || || | || ||| ||||| || | || ||||| ||||||||||| | Sbjct 4398 TCGTCGCGCCGGTCCTGGCA--GAAATCGATATCGAAATCCGGCATCGACACGCGCTCCG 4455 Query 40204 GGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGA 40263 |||||||||| |||||||| | ||| | | ||| || ||||| || |||||| | Sbjct 4456 GGTTCAGGAAGCGCTCGAACAGAAGCGCAAACCGGAGCGGATCCAGATCGGTGATGGTCA 4515 Query 40264 GGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGT 40323 | |||| | | ||| || ||| |||| |||||||| ||||| || | |||| Sbjct 4516 GCGCCCAGGCCGCGACCGAGCCCGCACCCGACCCACGTCCCGGTCCAACAGGAATGCCGC 4575 Query 40324 TCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAG 40367 | |||| ||||| ||||||||| | |||| |||||||||| Sbjct 4576 GCGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAG 4619 >seq67610 Length=141 Score = 91.5 bits (100), Expect = 5e-14 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 39221 CTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAG 39280 ||||||||| ||||| || ||||| ||||||||||||| ||| |||||||| || || || Sbjct 42 CTTCTTCTTACCCATCGCGCGGCGCAGAAGGTCGGCCTCACCGAGGCTGTAGCCCGCCAG 101 Query 39281 GATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGA 39318 |||||| || || | |||||| ||||| |||| || Sbjct 102 GATCTGGGCGATCTGCATCACCTGTTCCTGATAGACGA 139 >seq83405 Length=280 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 39224 CTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGAT 39283 |||||||||||| || ||||| || | ||| || |||| |||||| || | || | Sbjct 280 CTTCTTGCCCATCGCGCGGCGCAGCATGTCCGCGCCGCCCAAGCTGTAGCCGCCCAGCAC 221 Query 39284 CTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGAT 39343 ||| ||||||| | ||||||||||||||||| || | ||||||||| | |||| | Sbjct 220 CTGGGCCGCCTGCATCACCTGCTCCTGGTAGACGAAGACGCCGTAGGTCTCCTCCAGCAC 161 Query 39344 CTCGGCAAGCGGC 39356 || | | ||| || Sbjct 160 CTGGCCGAGCAGC 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159929332171928