Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq71830 105 1e-17 seq107811 100 4e-16 seq28054 98.7 2e-15 >seq71830 Length=566 Score = 105 bits (116), Expect = 1e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 200091 AAAGAAAGACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAA 200150 |||| | ||||||||||| | |||| | | || || || ||||| || || Sbjct 215 AAAGCACGACCGTACCGGCACCGGCACCATTAGTGTGTTTGGCTACCAAATGCGTTTTAA 274 Query 200151 TCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCA 200210 | || ||||||| ||||| ||||||||||||| ||| || | || ||||| || Sbjct 275 TTTAAAAGACGGTTTCCCGCTGGTGACGACCAAAAAGCTGCACTTGAAATCGATCATCCA 334 Query 200211 CGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGT 200270 |||| || | ||||| | | |||||| ||||||||||| || || || |||||| || Sbjct 335 CGAGTTGATCTGGTTTTTGAGCGGTGATACCAATATCAAATACCTAAAAGATAACGGCGT 394 Query 200271 CACCATTTGGGACGAATGGGC 200291 | ||||||||||| ||||| Sbjct 395 AAAAATTTGGGACGAGTGGGC 415 >seq107811 Length=6275 Score = 100 bits (110), Expect = 4e-16 Identities = 218/321 (68%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 200834 GCGAGCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCA 200893 || |||| || || |||||||| ||||| ||||| || || || | ||||||||||||| Sbjct 4414 GCAAGCTCTCGTGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCGTTCA 4355 Query 200894 ACATTGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATAT-GACTGTC 200952 | || || || ||||| || |||| |||||| | || || |||| | | ||| || Sbjct 4354 ATATCGCCTCGTACGCGCTGCTGACGCACATGATGGCGCAGCAGGCAGGTCTCGAC-GTG 4296 Query 200953 GGTGATTTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTT 201012 || || ||||| ||||| || |||||| ||| |||| || ||| ||||||| | Sbjct 4295 GGCGACTTCGTCTGGACCGGCGGTGACTGCCACCTCTATTCGAACCACATGGAGCAGG-T 4237 Query 201013 CGTC-TGCAACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCC 201071 || | || || | || | |||| || | || ||| | || || ||||| Sbjct 4236 CGACGAACAGCTCGCGCGCGCCCCGCTGCCGCTGCCCAAGCTCGTCATCAAGCGCAAGCC 4177 Query 201072 GGACTCTATCTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCC 201131 |||| | | ||||| |||| ||||| ||||| ||| | || |||| ||||| | Sbjct 4176 GGACACGCTGTTCGACTACACCTTCGACGACTTCGAGATCGTCGGCTACGCGTCGCATGC 4117 Query 201132 TGCGATAAAAGCACCGGTGGC 201152 || || || |||||||| Sbjct 4116 GCACATCAAGGCGCCGGTGGC 4096 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 ||||||||||||||| | || || || || || | ||||||||||||||| ||||| Sbjct 4787 CAGATGCGCTTCAATTTGCAGGATGGTTTTCCGCTCGTGACGACCAAGAAGCTGCATCTG 4728 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || ||||| || || ||| | |||||||| || |||||| ||| |||||| Sbjct 4727 AAGTCGATCATCCATGAACTGATCTGGTTCCTGGCGGGGTCCACCAACATCGGCTATCTG 4668 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 || || ||| |||| || |||||||| ||||| Sbjct 4667 AAGGAAAACGGCGTCAAGATCTGGGACGAGTGGGC 4633 >seq28054 Length=1167 Score = 98.7 bits (108), Expect = 2e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 200839 CTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACATT 200898 || || || ||| ||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 126 CTGTCGTGCCAGTTGTATCAGCGTAGTGCTGATATCTTTTTAGGCGTACCGTTCAACATT 185 Query 200899 GCATCATACGCACTACT 200915 ||||| ||||| ||||| Sbjct 186 GCATCGTACGCCCTACT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782271119808000