Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq67108 118 4e-22 seq105722 113 2e-20 seq73273 100 1e-16 >seq67108 Length=1010 Score = 118 bits (130), Expect = 4e-22 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 52177 TGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCT 52236 |||| ||||| |||||||| ||| | ||||| || || ||||| ||||||||| | | Sbjct 3 TGTACCAGCGCAGCGCCGACATCTTCCTAGGCGTGCCCTTCAACATCGCCAGCTATGCGT 62 Query 52237 TGCTGACGCATCTGATTGCTCGAGCAGT-TGGCCTTGATGTTGGTGAATTCATTTGGACT 52295 |||| ||||| || | || | |||||| || ||| | || ||||| ||||| ||||| Sbjct 63 TGCTCACGCACATGGTGGCGC-AGCAGTGTGACCTGGCCGTGGGTGACTTCATCTGGACA 121 Query 52296 GGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGGTTAGGGAACAGTGTAGTCGC 52355 || ||||| ||||||||||| |||||| || || ||||| | ||||| || ||| Sbjct 122 GGCGGCGATTGCCATATCTACAGCAACCACGTGGACCAGGTGAACGAACAACTGAGCCGC 181 Query 52356 GTGCCATATCCGTTCCC 52372 | ||| || || | ||| Sbjct 182 GCGCCCTACCCCTACCC 198 >seq105722 Length=466 Score = 113 bits (124), Expect = 2e-20 Identities = 224/332 (67%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 51798 GACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTC 51857 |||||| |||||||| ||| || | |||||||||||| |||| | | || | || Sbjct 338 GACCTGGCCAAGGGCTTTCCGGTCCTGACCACCAAGAAGCTGCACCTGCGCTCGATCTTC 279 Query 51858 GGGGAGTTGCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGC 51917 ||| |||||||||| || |||| || |||||| | |||| || | || Sbjct 278 ATCGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACGTCCGCTATCTGCAGGACAACAAG 219 Query 51918 GTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAG 51977 ||| |||| |||||||| ||||| || ||||| || |||||||||| || || || ||| Sbjct 218 GTCCGCATCTGGGACGAGTGGGCCGACGAAAACGGCGACCTGGGTCCCGTCTACGGCAAG 159 Query 51978 CAGTGGCGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTC 52037 || ||||| |||| || |||| || ||||| |||||| | ||||| Sbjct 158 CAATGGCGCTCGTGGGCGGCCCCGAACGGCCAGTCGATCGACCAGATCGCCAACCTCGTC 99 Query 52038 AAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGT 52097 | | |||| | | || | || || || ||||| ||||| || ||||| || Sbjct 98 GAGAACCTGAAGACCAACCCCAACAGCCGCCGCCACATCGTCTCGGCCTGGAACCCGGCC 39 Query 52098 GATTTGGATGATATGGCGTTGGCTCCCTGCCA 52129 ||| | || || ||||| || | |||||||| Sbjct 38 GATGTCGACGACATGGCCCTGCCGCCCTGCCA 7 >seq73273 Length=4456 Score = 100 bits (110), Expect = 1e-16 Identities = 170/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 51798 GACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTC 51857 |||||||| |||||||||||||| ||||||||||||||||||| | || | ||| Sbjct 276 GACCTGAGCCAGGGCTTCCCGCTCGTCACCACCAAGAAGGTGCACCTGAAGTCCATCGTC 217 Query 51858 GGGGAGTTGCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGC 51917 |||| |||||||||| || ||| | |||||||| || || || |||| Sbjct 216 CTGGAGCTGCTGTGGTTCCTGCGTGGCGACTCCAACGTCAAGTGGCTGCAGGAGCGCGGC 157 Query 51918 GTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAG 51977 || | || ||| ||||||||||| | || ||||||| || || ||||| | Sbjct 156 GTGACGATCTGGAACGAATGGGCGCGGCCCGACGGCGACCTGGGCCCCGTCTATGGCGTG 97 Query 51978 CAGTGGCGTAGTTGG---GATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTC 52034 |||||||| ||| | | | ||||||| | |||||| |||||| ||| ||| Sbjct 96 CAGTGGCGCTCCTGGCCAAAGCCCGATGGCGGCCA---CATCGACCAGATCGCTGACGTC 40 Query 52035 GTCAA 52039 ||||| Sbjct 39 GTCAA 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189844975974610