Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_031262.1 Length=54751 Score E Sequences producing significant alignments: (Bits) Value seq109371 201 4e-47 seq69633 113 2e-20 >seq109371 Length=32687 Score = 201 bits (222), Expect = 4e-47 Identities = 380/557 (68%), Gaps = 9/557 (2%) Strand=Plus/Plus Query 41142 CAACAACGACTGCGTGCCCGAAACCAAGTCCATGGG---CGACAGCTCGGTAGATCTGAT 41198 |||| |||||||||||| || ||| | ||||| ||||||| || | ||| | Sbjct 22916 CAACGACGACTGCGTGCAGGAGACCCGGCGCATGGCGTCCGACAGC---GTCGGCCTGGT 22972 Query 41199 TGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGG 41258 | |||||||| || ||| || || ||||||||| |||||| || | ||||||||| Sbjct 22973 CCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCGAACTTCGCCGACTTCGG 23032 Query 41259 CCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAGCTGCT 41318 |||||||| ||||| ||| |||| ||||||||||||||| |||| ||||||| Sbjct 23033 GCACACCGATAGCAACGAGCACTTCTTCCAGCAGATGGACTACCTGGTGCCGGAGCTGCT 23092 Query 41319 GCGCATCCTTGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTT---GTT 41375 |||| | || ||| || || | || ||| |||||| |||||||| | | Sbjct 23093 GCGCGTGCTGATGCCAGGCAGGGTGGCGGCGATCCACGTCAAGAACCGCATCGTGCCGAG 23152 Query 41376 CGGAAACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGAGGCGATCTT 41435 ||| | ||| |||| ||| | | |||| | ||||||| || || || | Sbjct 23153 CGGCATGGTCGAGGGCGTTGGCTTCCAGACCGAGTACCCGTTCGACATGGACACGCTGGC 23212 Query 41436 CCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGATGTGGT 41495 | | ||| ||||||||| ||||| ||||| | || | |||| || ||||| Sbjct 23213 CTGCTTTCGCCGGCACGGCTTCCACTACATCGGCCGCAAGCCCATCATCACGGACGTGGT 23272 Query 41496 GCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAGGACGCTACGAA 41555 ||||| ||||||||||| ||| ||||||||||| ||||| |||||||||| || Sbjct 23273 CCGGGAGAACAACCAGACCTACAGGCTGGGCTGGAGCGAGCAATGCAAGGACGGTAGCCG 23332 Query 41556 GATGGGCGTCGGCTCGCCGGAATACATTCTGTTGTTCCACAGGCCACAGTCAGACCGGTC 41615 |||||| ||||| | || ||| | ||| | |||| || | | | | | ||| Sbjct 23333 CATGGGCTTCGGCCTGTGCGAGTACCTGCTGCTCTTCCGCAAGGCGCCGACCGACGCTAG 23392 Query 41616 CAAGGGCTACGCCGACACCCCGGTCACCAAATCCAAGGACGATTACACTCGGGCCCGCTG 41675 | ||||| |||||| |||||| ||| ||||| ||| ||| | || | ||||| Sbjct 23393 CCGTGGCTATGCCGACCTACCGGTCTTCAAGGACAAGGCCGAGTACTCCCGCCCGCGCTG 23452 Query 41676 GCAGGTCGACGCGCACG 41692 |||| |||| || |||| Sbjct 23453 GCAGCTCGATGCCCACG 23469 Score = 105 bits (116), Expect = 2e-18 Identities = 255/374 (68%), Gaps = 18/374 (5%) Strand=Plus/Plus Query 39772 CCGGGCGAGATTCACTCGATGTTGTTGCCGCACCAG--CGCGATCTGGTGCGTTGGGCGG 39829 |||| |||||| || || ||||| | ||||||| |||| | || ||||| Sbjct 21510 CCGGCCGAGATCAACCCGCTGTTGAAGTTGCACCAGATCGCGGCC--GTCATCTGGGCAA 21567 Query 39830 TC-GCCGGGGGTAGGCGCGCGATCTTCGCGGCGTTCGGCCTGGGCAAGACGGTGATGCAG 39888 || ||| || | ||| ||| | ||| ||| |||||||||||||||||| | |||| Sbjct 21568 TCCGCCTCGGCTGTGCG-GCGCTGTTCATGGCCTTCGGCCTGGGCAAGACGTTCGTGCAA 21626 Query 39889 CTGGAGATCGTGCGCCT-GTC-GCTAGCCAAGCATGGCGGTGGGCGAGGCTTGATCGTGA 39946 |||||||||||||| | ||| || || |||| |||||| ||| ||||||| | Sbjct 21627 CTGGAGATCGTGCGGATCGTCCGCGCGC---GCAT--CGGTGGCATGGGCCTGATCGTCA 21681 Query 39947 TGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGACGCCAACATGCTGGGCATCGAAACCC 40006 | || ||| || || ||||||| | |||||| | |||||||||| | | Sbjct 21682 TCCCACTGTCGGTCCGCCAGGAGTTCGTGCGCGACGCGGCGAAGCTGGGCATCAAGGTCA 21741 Query 40007 GGTTTGTTCGCCGCACAGAAGAAGTCGGCGGCGACG---GTATCTACCTCACCAACTACG 40063 ||| | ||| || || || | | || | || | ||||||||||||||||||| Sbjct 21742 AGTTCATCCGCACCATCGACGAGGCTGACGACCCCGCGGGCATCTACCTCACCAACTACG 21801 Query 40064 AGAGCGTTCGCGATGGAAAGCTCGACCCGACACTGTTCACGGCCGTCTCACTCGACGAGG 40123 || || || || || ||||| ||||||| ||||||| | | | || ||||||| Sbjct 21802 AGTCGGTGCGGGACGGCAAGCTGGACCCGATGCTGTTCAGCGTGGCCAGCCTGGACGAGG 21861 Query 40124 CGAGCGTG-CTGCG 40136 || || || ||||| Sbjct 21862 CG-GCTTGCCTGCG 21874 >seq69633 Length=120 Score = 113 bits (124), Expect = 2e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 41265 CGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAGCTGCTGCGCAT 41324 ||| || |||| ||||||||||| ||||||||| | ||| | ||||||||||||||||| Sbjct 120 CGATGATAACGAGCATTTCTGGGAGCAGATGGATTTCCTGATCCCGCAGCTGCTGCGCAT 61 Query 41325 CCTTGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTTGTTCGGA 41379 || ||||||||||||||| ||| |||||| ||||| |||||| || |||| Sbjct 60 TCTGGCGCCCGGGCGGATCGCGGCCATCCATGTGAAGGATCGCATCGTGCCCGGA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174850402668106