Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq107653 163 3e-35 seq93596 87.8 2e-12 seq107657 84.2 3e-11 seq23519 84.2 3e-11 >seq107653 Length=176415 Score = 163 bits (180), Expect = 3e-35 Identities = 468/716 (65%), Gaps = 41/716 (6%) Strand=Plus/Minus Query 117068 GAAATGGACTTCAGCATCGAGAAGACTGCGGTCACCGCTAAGACCAGAGCACTCAGAGCT 117127 || |||| |||||||||||||||| | ||||| || |||| | | || || || Sbjct 133145 GAGATGGCCTTCAGCATCGAGAAGGTCACCGTCACGGCGAAGAGCCGCGCGCTGGCCGCC 133086 Query 117128 GAGTATACTCTAGAACTAGCACAAGACCTCAAGGCAATCCACGGTCTTGATGCTGAGCAG 117187 ||||| | | ||||| ||||| ||||| |||||| | |||||||| || || ||| Sbjct 133085 GAGTACTCGATGGAACTGGCACAGGACCTGAAGGCAGTACACGGTCTCGACGCCGAGGCT 133026 Query 117188 GAACTCGCTAACCTTCTTTCCAGCGAGATCCTTGCTGAAATCAACCGCGAAGTTGTAAGA 117247 || ||| | ||| | || ||| ||||||||| || || ||||||||||| | || | Sbjct 133025 GAGCTCTCGAACATCCTCGCCACCGAGATCCTGGCCGAGATCAACCGCGAGGCGGTTCGT 132966 Query 117248 ACCGTTTACACCGTTGCTAAGCCTGGTGCTCAGAACNNNNNNNNNNNNNNNNNTATCTTC 117307 || || ||| || |||| || | |||| | ||||| Sbjct 132965 ACGGTCCTGACCTCCGCCAAGCAGGGATCGCAGATCGACACGACCAACCCGGGCTTCTTC 132906 Query 117308 GACCTCGACGTTGATTCAAACGGACGTTGGTCAGTTGAGAAGTTCAAGGGTCTAATGTTC 117367 ||||| ||||| || || ||||| || ||||| |||||||||||||||||||| ||| Sbjct 132905 GACCTGGACGTCGACTCGAACGGCCGCTGGTCGGTTGAGAAGTTCAAGGGTCTGTATTTC 132846 Query 117368 CAGATCGAGCGTGA-TGCTAACGCTATCGCTCAGCAAACTCGTAGAGGAAAGGGCAACTT 117426 || |||||||| || ||| ||| ||||| || | || | | || ||||| ||| | Sbjct 132845 CACATCGAGCGCGAGTGC-AACCAGATCGCCAAGGAGACGAGGCGTGGCAAGGGTAACAT 132787 Query 117427 CATCATCACTTCTGCTGATGTTGCTTCTGCACTCGCTATGTCTG-GCACCCTCGACTATT 117485 | | ||| | || || || || || || |||| | || || ||| Sbjct 132786 CCTGATCTGCACGGCGGACGTGGCATCGGC----------TCTGAACGCCGCCGGCTA-- 132739 Query 117486 CCTCAGGTCTAAG-CGGCGCTGGTGGTC--CTTCCATCGGTGAAGTTGATGACACTGGCA 117542 |||| || | | || |||| | | | ||| | || || ||||| |||| Sbjct 132738 CCTC---TCCATGCCGAACCTGGGTGACAACCTCC-------AGGTCGACGACACGGGCA 132689 Query 117543 ACCTCCTAGTCGGAACCATGAACGGCAGAATCAAGGTCTACGTTGATCCTTATTCCGCTA 117602 || | | | || | | ||||||| | |||||||||||| | || || || ||| | Sbjct 132688 ACACCTTCGCGGGTATCCTGAACGGTCGCATCAAGGTCTACATCGACCCCTA---CGCGA 132632 Query 117603 ACGTTTCCAACAACCACTACTATGT-TGTTGGTTATAAGGGTTCTTCACCATATGACGCA 117661 || ||| || |||| || || || |||||| | | || || ||||| Sbjct 132631 TCGGCGGAAACTAC-------ATGTGCGTAGGCTACAAGGGTCCGACGCCTTACGACGCC 132579 Query 117662 GGTCTATTCTACTGCCCATATGTTCCCCTCCAGATGCTCAGAAGCATCGATCCCGAG-AC 117720 || | ||||||||||| || ||||| |||||| | | | || | ||| | | Sbjct 132578 GGCATCTTCTACTGCCCGTACGTTCCTCTCCAGCAGGTTCG-TGCTGTGTGGCCGGGTAA 132520 Query 117721 CTTCCAGCCTAAGATTGGCTTCAAGACCCGCTACGGCATGGTTGCGAACCCATTCG 117776 |||| ||| || |||||||||||||||||||||||||| |||||||| |||| Sbjct 132519 CTTCGGTCCTCGCATCGGCTTCAAGACCCGCTACGGCATGGTCGCGAACCCCTTCG 132464 >seq93596 Length=211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGCC 157486 |||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| || Sbjct 14 TAGCTCAGCTGGATAGAGCACCTGCCTTCTAAGCAGGTGGTCGCAGGTTCGAATCCTGCA 73 Query 157487 TGAGACGCCAGTC 157499 | | ||||| || Sbjct 74 GGGGTCGCCAATC 86 >seq107657 Length=17533 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 158205 TCGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGA 158264 ||||||||| |||||| ||||||||||| | || |||| || || |||| |||||||| Sbjct 10131 TCGGGGTGTGGCTCAGCCTGGTAGAGCGCTGCGTTCGGGACGCAGAGGCCGGAGGTTCGA 10072 Query 158265 ATCCTATCACCCCGAC 158280 ||||| |||||||||| Sbjct 10071 ATCCTCTCACCCCGAC 10056 >seq23519 Length=288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 ||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||||||| Sbjct 170 GTAGCTCAGATGGATAGAGCAGCAGCCTTCTAAGCTGCTGGTCGCTGGTTCGAATCCAGC 111 Query 157486 C 157486 | Sbjct 110 C 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595478325538160