Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq110395 149 2e-30 seq106734 132 1e-25 >seq110395 Length=10286 Score = 149 bits (164), Expect = 2e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 9987 CAAATATTCGTCAAGACGCTCACTGGGAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 10046 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| ||||| || |||||||| Sbjct 10047 ACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAG 10106 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | ||||| || | || || ||||||| || || Sbjct 10107 CGCCTGATTTTTGCAGGCAAGCAGTTGGAAGACGGCCGCACGCTCTCCGATTACAATATC 10166 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || ||||||| Sbjct 10167 CAGAAGGAATCGACCCTCCATCTTG 10191 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||||||||||||||| ||| || || Sbjct 9759 CAGATCTTCGTTAAGACGCTTACTGGGAAGACGATCACCCTCGAGGTCGAATCGTCCGAT 9818 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || || || ||||| || ||||| ||||| || || || || Sbjct 9819 ACCATCGACAACGTTAAGGCCAAAATCCAGGATAAGGAAGGCATCCCCCCCGATCAACAG 9878 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || |||||||| || || | || || |||| || ||| || Sbjct 9879 CGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGGCGTACCCTCTCCGACTACAACATC 9938 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 9939 CAGAAGGAGTCCACCCTCCAT 9959 Score = 95.1 bits (104), Expect = 3e-14 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 |||||||| ||||||||||| || |||||||| ||||| |||||||| || ||| ||||| Sbjct 9633 ATCCCTCCCGACCAGCAACGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGGACT 9692 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||| | || || ||| |||| || || || || || || |||| Sbjct 9693 CTTTCTGAYTACAACATCCAGAAGGAGTCCACTCTCCA-CTTG 9734 >seq106734 Length=403 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 34 CAGATCTTTGTGAAGACGCTCACGGGCAAGACAATCACGCTGGAGGTAGAGTCTTCGGAC 93 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 94 ACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCCGACCAACAA 153 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||| | || || || | || || | || ||||| || Sbjct 154 CGTCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGGCGCACGCTCTCGGACTATAATATC 213 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || ||||| Sbjct 214 CAGAAGGAGTCCACCCTTCATCT 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202016168549994