Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq110395 174 1e-38 seq106734 150 2e-31 >seq110395 Length=10286 Score = 174 bits (192), Expect = 1e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | |||| ||| || ||| ||||||||| ||||| |||||||| Sbjct 9983 GCCGCCGCGAAGACGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 9924 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| ||| |||| |||||||||||||||||||| || || |||||||| || | ||| Sbjct 9923 GAGGGTACGCCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCGGGGGG 9864 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||| ||| || |||| || | |||| | | | || ||| ||| || | Sbjct 9863 GATGCCTTCCTTATCC-TGGATTTTGGCCTTAACGTTGTCGATGGTATCGGACGATTCGA 9805 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || || || |||||||| ||||| ||||||||| Sbjct 9804 CCTCGAGGGTGATCGTCTTCCCAGTAAGCGTCTTAACGAAGATCTGCATG 9755 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||||| || ||||| || || |||||||| || || || |||||||| ||||| | Sbjct 10197 ACGTACCA--AGATGGAGGGTCGATTCCTTCTGGATATTGTAATCGGAGAGCGTGCGGCC 10140 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 ||| || | ||||||||| || || ||||||||||| ||||| | || | || ||||| Sbjct 10139 GTCTTCCAACTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTT 10080 Query 41767 GTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACC 41821 |||| ||| || ||| | | | ||| | |||||| |||||| ||||| | Sbjct 10079 GTCCTGGATCTTAGCCTTGACGTTATCGATG-----GTGTCGGACGACTCGACCTCGAGG 10025 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || |||||||| ||||| || |||||| Sbjct 10024 GTGATGGTCTTCCCAGTGAGCGTCTTGACGAATATTTGCATG 9983 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||| || || ||| ||||||||| ||||| || || || Sbjct 9755 GCCGCCACGAAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTARTCAGA 9696 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || || || |||| ||||||||||| || ||||| |||||||| || ||||| Sbjct 9695 AAGAGTCCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGTTGCTGGTC 9642 >seq106734 Length=403 Score = 150 bits (166), Expect = 2e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || ||| ||||||||| || |||||||| ||||| |||||| |||| || | | Sbjct 236 AGATGAAGGGTGGACTCCTTCTGGATATTATAGTCCGAGAGCGTGCGCCCGTCCTCCAAC 177 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||||||||| ||||| || |||||||| | ||| | | ||||||||| ||| | Sbjct 176 TGCTTGCCGGCGAAGATCAGACGTTGTTGGTCGGGGGGGATACCTTCCTTGTCC-TGAAT 118 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | ||| | | | |||||| ||||| ||||||| ||| || || || || Sbjct 117 CTTGGCCTTGACGTTGTCGATAGTGTCCGAAGACTCTACCTCCAGCGTGATTGTCTTGCC 58 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||||||| || || |||||||| Sbjct 57 CGTGAGCGTCTTCACAAAGATCTGCAT 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461661391661200