Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq345 100 6e-16 seq370 84.2 5e-11 >seq345 Length=266695 Score = 100 bits (110), Expect = 6e-16 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || || || || ||||| || || || | || || | || | ||| Sbjct 140967 CAAGCCTCCACCTCCGAGCTCTATGGCAAGGTCGTCGAGACGCCACAGAGCGAGACGACG 141026 Query 61149 CCGTTTTATCCTCG-TAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 ||||| ||||| || | |||| || || ||||| || ||||| ||||||||||| Sbjct 141027 CCGTTCTATCCACGCTCGCCC-TACGGCTGCGCAAAGCTCTACGCCTACTGGATTTGCGT 141085 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGAT-TTGTTTCAATCACGAGA 61266 |||||| | ||| ||||| ||||||| |||||| ||| |||||| || ||||||| Sbjct 141086 GAATTACAGGGAGAGTTATGGGATGTTTGCATGTAATGGGATCTTGTTT-AACCACGAGA 141144 Query 61267 GTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATAT 61324 |||| | | || | ||||||||| | || ||||||| ||| ||||| |||| Sbjct 141145 GTCCAAGGCGCGGACGGACGTTTGTGACGAGGAAGATTACGAGGGCTGTTGCTGATAT 141202 >seq370 Length=376741 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || |||||||||||| | || | ||| | || || || || || || || ||||| | Sbjct 251996 CTCATTGGCATGAACTCCGATTTGATGTGCCAATATATTGAGTTTGTTGCTGACCGACTG 252055 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || | ||||| | |||||||| |||||| |||||| || | || ||||| Sbjct 252056 CTCGTCTCTCTTGGCAATGAGAAAGTCTACAACAAGTCGAACCCTTTCGACTTCATGGAT 252115 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTAT 230619 | ||||| | || || ||||| |||||||| |||||||| ||| ||| ||| Sbjct 252116 ATGATTTCATTGCAGGGCAAGACTAACTTCTTTGAAAAGCGAGTCTCTGATTAT 252169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057815569803860