Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq298 122 1e-22 seq433 116 4e-21 >seq298 Length=714934 Score = 122 bits (134), Expect = 1e-22 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 42976 CCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTA 43035 |||| || | ||||||||||| ||||| |||||||||| ||||| ||| | || || | Sbjct 385838 CCAAGTGGAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCGA 385779 Query 43036 GCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 43095 | ||||| ||||| || || || ||||| ||||||| || | | |||||||||| ||| Sbjct 385778 GTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCGGGGGGAATACCCTCCTTGTCC-TGA 385720 Query 43096 TTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 | || | ||||| | | | ||||| || || || || | |||||||| ||| Sbjct 385719 ATCTTCGCTTTGACATTGTCAATGGTGTCAGATGACTCGACTTCCAGGGTGATGGTCTTG 385660 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||||||||| Sbjct 385659 CCGGTAAGGGTCTTCACGAAGATTTGCAT 385631 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || || || |||| || |||||||| |||||||| Sbjct 385594 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 385535 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||| || |||| || | || ||||||||| ||| | || | | | ||| Sbjct 385534 GATGAGACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCC-TGAATCTTCGCCTTAACGT 385476 Query 43112 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || | |||| ||| || || |||| ||||| || ||||| || || ||||| | Sbjct 385475 TGTCAATGGTGTCAGACGACTCGACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTCTTCA 385416 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 385415 CAAAGATTTGCAT 385403 >seq433 Length=1580550 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| || || ||| | || ||||||||||| |||||||| Sbjct 1108717 CTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCCTCTAGCTGCTTTCCAGCGAA 1108658 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || || || ||||| | || | || |||||||||| ||| | || | |||| Sbjct 1108657 GATCAGACGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 1108599 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||||||| |||||||| |||||||| | Sbjct 1108598 TATCAATGGTGTCGGATGACTCCACCTCCAACGTGATGGTCTTGCCCGTAAGCGTCTTGA 1108539 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 1108538 CGAAGATCTGCAT 1108526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| || ||||| | || || || | || || || ||||| || || || Sbjct 1108488 TCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCGAGTTGCTTGCCGGCAAAA 1108429 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || || ||||| | || | || ||||||||| ||| || || | | Sbjct 1108428 ATGAGACGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTG 1108369 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 1108368 TCGATGGTGTCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACG 1108309 Query 43173 AAGATTTGCATT 43184 |||||||||||| Sbjct 1108308 AAGATTTGCATT 1108297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813154118160