Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq298 122 9e-23 seq433 95.1 1e-14 >seq298 Length=714934 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || ||||||||||| || || |||| |||||||||||| || ||| Sbjct 385371 GTAGACTCCTTCTGAATGTTATAGTCAGACAGGGTGCGACCGTCTTCGAGCTGCTTGCCA 385312 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||||||||||||||| |||||||| || || ||| || || Sbjct 385311 GCAAAGATAAGACGTTGCTGATCGGGAGGGATGCCTTCCTTATCTTGGATCTTCGCCTTC 385252 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | |||||||||| ||| | |||||| ||||| | || Sbjct 385251 ACGTTATCAATAGTGTCAGAAGATTCCACCTCAAGGGTGATCGTCTTCCCGGTGAGGGTC 385192 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 385191 TTGACAAAGATCTGCAT 385175 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || |||||||| ||||| | |||| | |||||||| || || |||||| | Sbjct 385822 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCGAGTTGCTTGCCAGCAAA 385763 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| || || || || ||||| || || || || ||||| ||| | || | ||| | Sbjct 385762 GATAAGGCGCTGTTGGTCGGGGGGAATACCCTCCTTGTCC-TGAATCTTCGCTTTGACAT 385704 Query 139693 TTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 | || || |||| | | ||| || || | ||| | ||||||||||| | || || | Sbjct 385703 TGTCAATGGTGTCAGATGACTCGACTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCA 385644 Query 139752 CGAATATTTGCATA 139765 |||| ||||||||| Sbjct 385643 CGAAGATTTGCATA 385630 >seq433 Length=1580550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || ||||| || || || || || || | Sbjct 1108296 CCACCCCGCAGACGGAGAACAAGGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCAGAC 1108237 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | || |||||||| || ||||| |||||||||||||||| |||||||| Sbjct 1108236 AGGGTGCGCCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCGGGAGGG 1108177 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || ||| | | || | || |||| | ||| || Sbjct 1108176 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTATCGATGGTATCGGAAGACTCGACT 1108117 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | || || ||||| || ||||| Sbjct 1108116 TCGAGAGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1108070 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || | |||| | || || ||||| || ||| Sbjct 1108722 GTAGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCCTCTAGCTGCTTTCCA 1108663 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || ||||||||||||| || || ||||| ||||| || ||||| ||| | || | || Sbjct 1108662 GCGAAGATCAGACGTTGTTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTGGCCTT 1108604 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||||||||| | || | |||||||| || | ||| Sbjct 1108603 GACATTATCAATGGTGTCGGATGACTCCACCTCCAACGTGATGGTCTTGCCCGTAAGCGT 1108544 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1108543 CTTGACGAAGATCTGCAT 1108526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | |||| || || || || ||||||||||||||| Sbjct 1108525 GCCACCACGGAGACGAAGAACGAGATGAAGGGTCGATTCCTTCTGAATGTTATAATCGGA 1108466 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || ||||| || || || ||| | || |||||||| || || ||||| Sbjct 1108465 GAGGGTACGACCATCCTCGAGTTGCTTGCCGGCAAAAATGAGACGTTGTTGGTCAGGAGG 1108406 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||||| | ||| || Sbjct 1108405 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGATGACTCGAC 1108346 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| || | || || ||||| |||||||| Sbjct 1108345 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCAT 1108298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060143102400