Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq370 129 6e-25 >seq370 Length=376741 Score = 129 bits (142), Expect = 6e-25 Identities = 244/357 (68%), Gaps = 4/357 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || |||||||| ||| | |||||| || | ||| || || ||||| || || || ||| Sbjct 249683 CAAGCAAAATCGGTATGCATGCCCTCGTCGCGACTGATTAGCTCGTTGGAGAAAGTCAAT 249742 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 ||||||||||||||||| ||| | | |||||| || |||||||| || || ||||| || Sbjct 249743 CCTGGCATCAATCCTCGCTTTCTCATCCAAAAGATGGCAGCAAAGGATCCTGAAAAAAAA 249802 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || || ||||| || || || | | || || ||| | | | | | | | || Sbjct 249803 ATGCCTTCCACTGCTGCGAAAGCAACAAGCCGCTCCGAAAATGCGGATGTCTCGGTAGAA 249862 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||||||| |||||||| | |||| || ||| || || ||||| || || Sbjct 249863 ATCCATTTCAATGCCCATTCTGCCTTTTGCTTGATAGAAGGAATGGTTTCGATCGCCCGG 249922 Query 14112 AATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 || | | | ||| || | || | |||| ||||| || ||||| || | | |||| Sbjct 249923 AAGAGAAAGTCCCGTTCGTCAGGATCCTTG--ATGTAAGTGTCAATTAGGAGGGAATACG 249980 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 || ||||| | ||||| || || ||||||||||| || || | || |||| Sbjct 249981 CCTCGGAGTGCACATTTTCGATCATAATTTGAAAACCATAGAAACAACGGGCCTCCG 250037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724270114800