Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq298 98.7 9e-16 seq433 84.2 2e-11 >seq298 Length=714934 Score = 98.7 bits (108), Expect = 9e-16 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTT 94867 |||||| ||||| || | ||| || ||| | || || || ||||| ||||| || Sbjct 385600 AGTAGACTCCTTCTGAATGTTGTAGTCGG--AGAGGGTGCGACCGTCCTCGAGCTGCTTG 385543 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | ||||| | | || ||||| || ||||| ||||| ||||| | ||| || ||| Sbjct 385542 CCAGCGAAGATGAGACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTTCGCC 385483 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || ||| | | | ||||||| ||||| || | ||||| || || ||||||||| Sbjct 385482 TTAACGTTGTCAATGGTGTCAGACGACTCGACCTCGAGGGTGATTGTCTTGCCAGTAAGA 385423 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || ||||||||||| ||||| Sbjct 385422 GTCTTCACAAAGATTTGCAT 385403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 |||||| ||||| || | |||||| || || ||| || || ||||| || || Sbjct 385372 AGTAGACTCCTTCTGAATGTTATAGTCAGACAGGGTGCGACCGTCTTCGAGCTGCTTGCC 385313 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 ||||||| | | ||||||||| ||||| || ||||| || || | || || ||||| Sbjct 385312 AGCAAAGATAAGACGTTGCTGATCGGGAGGGATGCCTTCCTTATCTTGGATCTTCGCCTT 385253 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| | | |||||||| || || |||| ||||| || || || || || || Sbjct 385252 CACGTTATCAATAGTGTCAGAAGATTCCACCTCAAGGGTGATCGTCTTCCCGGTGAGGGT 385193 Query 94990 TTTCACAAAGATCTGCATGC 95009 || |||||||||||||||| Sbjct 385192 CTTGACAAAGATCTGCATGC 385173 >seq433 Length=1580550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || |||||||| ||| | ||||| | | || ||||| || ||||||||||| || Sbjct 1108909 ATCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCTTCCTT 1108850 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || ||||| || | | | ||||| | ||||| || | ||||| Sbjct 1108849 ATCTTGAATCTTAGCCTTCACATTGTCAATTGTGTCGGAAGATTCGACCTCGAGAGTGAT 1108790 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || || || ||||||||||| Sbjct 1108789 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1108754 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| ||||| | ||||| | | ||| || || ||||| || || || || Sbjct 1108681 ATCCTCTAGCTGCTTTCCAGCGAAGATCAGACGTTGTTGGTCAGGAGGGATGCCCTCCTT 1108622 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || |||||||| | | ||||| | || || || | |||||| Sbjct 1108621 GTCCTGAATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTCCACCTCCAACGTGAT 1108562 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || ||||| || || || ||||||||||||| Sbjct 1108561 GGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATGC 1108524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287714535920