Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq28 136 6e-28 seq581 132 8e-27 >seq28 Length=1223 Score = 136 bits (150), Expect = 6e-28 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||||| ||| |||||| || ||||| || || ||||| || || || || Sbjct 315 GCTAAGCGTCATCGCAAGAT-TCTTCGCGACAACATTCAGGGTATCACGAAACCCGCCAT 257 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||| ||||| || |||||| ||||||| | |||||||||||| Sbjct 256 TCGTCGTCTCGCTCGTCGAGGTGGTGTGAAGCGTATCTCTGGTCTCATCTATGAAGAGAC 197 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||||| ||| | ||||||||||| Sbjct 196 TCGTGGTGTCCTCAAGATCTTCCT 173 >seq581 Length=57479 Score = 132 bits (146), Expect = 8e-27 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||||||||| || || |||||||| || ||||||||||| || |||||| |||| Sbjct 19449 AGGAATCACCAAGCCTGCCATTCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATCTC 19508 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| ||||||| |||| ||| | |||||||||||| ||| ||| |||| Sbjct 19509 TGGTCTTATCTACGAAGAGACCCGTGGTGTCCTCAAGATCTTCCTCGAGAACGTCATCCG 19568 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 || || || ||| || ||||||||||| || Sbjct 19569 CGACTCTGTCACCTACACTGAGCACGCTAAGCG 19601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074631301046