Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq497 140 2e-28 seq332 107 1e-18 seq298 91.5 1e-13 seq433 84.2 1e-11 >seq497 Length=9049 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5543 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5602 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5603 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5637 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 7545 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 7604 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 7605 GCCAATATTTAGCTTTA 7621 >seq332 Length=249393 Score = 107 bits (118), Expect = 1e-18 Identities = 184/264 (70%), Gaps = 10/264 (4%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTC--AACATGCCTGAAGT 6289 ||||| | ||||| || || || ||||| || |||||| || | |||||| |||| || Sbjct 244798 CCAAGATTGAGGGCAAAGGCAATGGTATCAAGACCGTC--TGCCCTAACATGTCTGACGT 244855 Query 6290 CGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGG 6349 ||| || || | |||||| | || |||||||| |||| ||||||||||| || || Sbjct 244856 CGCCCGTGCTCTTAGTCGCCCTCCGACGTACCCGACCAAATTCTTCGGGTGCGAGCTGGG 244915 Query 6350 CGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTC 6409 ||| ||||| || ||| | || ||||| |||| |||||| ||||| | ||| | Sbjct 244916 CGCCCAGACCTCATTCGATGAAAAGAACGACCGCTACATCGTCAACGGCGCCCATGA--- 244972 Query 6410 TGCCAAGC---TGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGA 6466 |||||| | ||| || | || || | ||| ||| ||||| || || || | Sbjct 244973 TGCCAATCGTTTGCGAGAACTCCTGGATGCCTTCATTGAGAAGTTCGTCCTATGCAAGTC 245032 Query 6467 ATGCGATAACCCGGAGACCGAGCT 6490 ||| | || || |||||||| || Sbjct 245033 TTGCAAGAATCCCGAGACCGATCT 245056 >seq298 Length=714934 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 38110 CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTA 38169 |||| || |||||||||||||| ||||| ||||||||||| | | || | || || | Sbjct 385838 CCAAGTGGAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCGA 385779 Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229 ||| || || ||||| || ||||| ||||| |||| ||| | || || |||||| || Sbjct 385778 GTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGAA 385719 Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289 | || || ||||| | | || || || ||||| | || || || || | Sbjct 385718 TCTTCGCTTTGACATTGTCAATGGTGTCAGATGACTCGACTTCCAGGGTGATGGTCTTGC 385659 Query 38290 CCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||| |||||||| || ||||| Sbjct 385658 CGGTAAGGGTCTTCACGAAGATTTGCAT 385631 >seq433 Length=1580550 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||||||||| | | ||| | || | || || ||| |||||| ||||| |||||||| Sbjct 1108984 ATTACCACCACGGAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 1108925 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 ||| | ||| | || || | ||||| ||||| || || || || |||||||| | Sbjct 1108924 AGAGAGCGTACGACCATCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGTTGATCAGG 1108865 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 ||| | ||||| || || ||| || ||||||||| | | || || | ||| Sbjct 1108864 GGGAATACCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATTGTGTCGGAAGATTC 1108805 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || || || | ||| || ||||| |||||||| Sbjct 1108804 GACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1108754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944660890882