Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01-
26] 622 sequences; 33,316,483 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq497 140 2e-28
seq332 107 1e-18
seq298 91.5 1e-13
seq433 84.2 1e-11
>seq497
Length=9049
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 5543 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5602
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 5603 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5637
Score = 107 bits (118), Expect = 1e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 7545 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 7604
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 7605 GCCAATATTTAGCTTTA 7621
>seq332
Length=249393
Score = 107 bits (118), Expect = 1e-18
Identities = 184/264 (70%), Gaps = 10/264 (4%)
Strand=Plus/Plus
Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTC--AACATGCCTGAAGT 6289
||||| | ||||| || || || ||||| || |||||| || | |||||| |||| ||
Sbjct 244798 CCAAGATTGAGGGCAAAGGCAATGGTATCAAGACCGTC--TGCCCTAACATGTCTGACGT 244855
Query 6290 CGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGG 6349
||| || || | |||||| | || |||||||| |||| ||||||||||| || ||
Sbjct 244856 CGCCCGTGCTCTTAGTCGCCCTCCGACGTACCCGACCAAATTCTTCGGGTGCGAGCTGGG 244915
Query 6350 CGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTC 6409
||| ||||| || ||| | || ||||| |||| |||||| ||||| | ||| |
Sbjct 244916 CGCCCAGACCTCATTCGATGAAAAGAACGACCGCTACATCGTCAACGGCGCCCATGA--- 244972
Query 6410 TGCCAAGC---TGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGA 6466
|||||| | ||| || | || || | ||| ||| ||||| || || || |
Sbjct 244973 TGCCAATCGTTTGCGAGAACTCCTGGATGCCTTCATTGAGAAGTTCGTCCTATGCAAGTC 245032
Query 6467 ATGCGATAACCCGGAGACCGAGCT 6490
||| | || || |||||||| ||
Sbjct 245033 TTGCAAGAATCCCGAGACCGATCT 245056
>seq298
Length=714934
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 38110 CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTA 38169
|||| || |||||||||||||| ||||| ||||||||||| | | || | || || |
Sbjct 385838 CCAAGTGGAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCGA 385779
Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229
||| || || ||||| || ||||| ||||| |||| ||| | || || |||||| ||
Sbjct 385778 GTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGAA 385719
Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289
| || || ||||| | | || || || ||||| | || || || || |
Sbjct 385718 TCTTCGCTTTGACATTGTCAATGGTGTCAGATGACTCGACTTCCAGGGTGATGGTCTTGC 385659
Query 38290 CCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | ||| |||||||| || |||||
Sbjct 385658 CGGTAAGGGTCTTCACGAAGATTTGCAT 385631
>seq433
Length=1580550
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146
||||||||| | | ||| | || | || || ||| |||||| ||||| ||||||||
Sbjct 1108984 ATTACCACCACGGAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 1108925
Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206
||| | ||| | || || | ||||| ||||| || || || || |||||||| |
Sbjct 1108924 AGAGAGCGTACGACCATCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGTTGATCAGG 1108865
Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266
||| | ||||| || || ||| || ||||||||| | | || || | |||
Sbjct 1108864 GGGAATACCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATTGTGTCGGAAGATTC 1108805
Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || | || || || || || || | ||| || ||||| ||||||||
Sbjct 1108804 GACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1108754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334944660890882
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |