Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq433 127 2e-24 seq298 123 2e-23 seq117 86.0 5e-12 >seq433 Length=1580550 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||||| || || ||| | || Sbjct 1108754 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAATCTTCC 1108813 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || |||||||| ||||| |||||||| || |||||| Sbjct 1108814 GACACAATTGACAATGTGAAGGCTAAGATTCAAGATAAGGAAGGTATTCCCCCTGATCAA 1108873 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || |||||||||||| | || ||| || || |||| ||||||||| Sbjct 1108874 CAGCGTCTTATCTTCGCCGGCAAACAGCTTGAAGATGGTCGTACGCTCTCTGATTACAAC 1108933 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 1108934 ATTCAGAAGGAGTCCACC 1108951 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || ||||||| || || || | || Sbjct 1108298 ATGCAAATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCC 1108357 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || |||||||| || || || || || ||| Sbjct 1108358 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAA 1108417 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||||||||| || | |||||| || ||| |||||||||| ||| Sbjct 1108418 CAACGTCTCATTTTTGCCGGCAAGCAACTCGAGGATGGTCGTACCCTCTCCGATTATAAC 1108477 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || ||||| ||| | ||| | ||| Sbjct 1108478 ATTCAGAAGGAATCGACCCTTCATCTCGTT 1108507 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | || ||||| | || Sbjct 1108526 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACGTTGGAGGTGGAGTCATCC 1108585 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || ||||| ||||||||||| || || || || ||| Sbjct 1108586 GACACCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAA 1108645 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||| |||||||| |||||| |||| || |||||| Sbjct 1108646 CAACGTCTGATCTTCGCTGGAAAGCAGCTAGAGGATGGGCGCACCCTCTCTGACTACAAC 1108705 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||| | ||| | || | || || ||| Sbjct 1108706 ATCCAGAAAGAGTCTACACTCCATCTTGTTCTTCGCCTCCGTGGCGGT 1108753 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || | ||||| ||||| || | || Sbjct 1108070 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCTTCC 1108129 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| || || || ||||||||||| || || ||||| || Sbjct 1108130 GATACCATCGATAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1108189 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||| | |||||| |||||| | || || ||||| Sbjct 1108190 CAACGTCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGGCGCACCCTGTCTGACTACAAT 1108249 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || | ||| | || |||| || || Sbjct 1108250 ATCCAGAAGGAGTCAACCCTTCACCTTGTTCTCCGTCTGCGGGGTGG 1108296 >seq298 Length=714934 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || ||||| || | | Sbjct 385631 ATGCAAATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAAGTCGAGTCATCT 385690 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || ||||| || ||||| ||||||||||||||||| ||||| ||| Sbjct 385691 GACACCATTGACAATGTCAAAGCGAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAA 385750 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| || | || ||| ||||| | || ||||||||| Sbjct 385751 CAGCGCCTTATCTTTGCTGGCAAGCAACTCGAAGATGGGCGCACTCTTTCTGATTACAAC 385810 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 385811 ATTCAGAAGGA 385821 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || |||| || || || || | | Sbjct 385403 ATGCAAATCTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTCGAGTCGTCT 385462 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| |||||||| || ||||| ||||||||| Sbjct 385463 GACACCATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 385522 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| |||||| ||||||| |||||| Sbjct 385523 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCTCCGACTACAAC 385582 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 385583 ATTCAGAAGGAGTCTAC 385599 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || ||| |||| ||||| |||||| | | Sbjct 385175 ATGCAGATCTTTGTCAAGACCCTCACCGGGAAGACGATCACCCTTGAGGTGGAATCTTCT 385234 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || ||||| ||||| || || || |||||||| Sbjct 385235 GACACTATTGATAACGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCTCCCGATCAG 385294 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| ||||| ||| | || || |||||| | || || || ||| Sbjct 385295 CAACGTCTTATCTTTGCTGGCAAGCAGCTCGAAGACGGTCGCACCCTGTCTGACTATAAC 385354 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||| | || | || | ||||||||| Sbjct 385355 ATTCAGAAGGAGTCTACTCTCCATCTCGTCCTCCGTCTTCGCGGAGGT 385402 >seq117 Length=34262 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||||| ||| || | ||| | |||||||||| |||||||| || ||||||||| Sbjct 15581 GACACCGTCGACCATTTGAAATCCATGATTCAAGACAGCGAGGGTATCCCGCCCGATCAA 15522 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| ||||| || | |||||| || ||| | || | || ||||| ||| Sbjct 15521 CAACGACTTATTTTTGCTGGAAGACAGTTGGAAGATGATAAAACGATGTCGGATTATAAC 15462 Query 22399 ATTCAAAAAGAATCCAC 22415 || || | | |||||| Sbjct 15461 ATACAGAGGGGATCCAC 15445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724818199430