Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq433 123 2e-23 seq298 96.9 3e-15 seq367 89.7 5e-13 >seq433 Length=1580550 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| || || ||||| ||| || ||||| |||||| Sbjct 1108266 GTTGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCCTCGAGCTGCTTTCCA 1108207 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || ||||| |||||||| ||||||||||||||| ||| || ||| Sbjct 1108206 GCGAAGATCAGACGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTG 1108147 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | | ||||||||||| || | || ||||| || || || Sbjct 1108146 ACGTTATCGATGGTATCGGAAGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGGGTC 1108087 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 1108086 TTGACGAAGATCTGCATG 1108069 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || || ||||| || | ||||| ||| |||||||| |||||| Sbjct 1108722 GTAGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCCTCTAGCTGCTTTCCA 1108663 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || || || || ||||| ||||||||||||||| || || |||| Sbjct 1108662 GCGAAGATCAGACGTTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTG 1108603 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | || | || ||||| || || || Sbjct 1108602 ACATTATCAATGGTGTCGGATGACTCCACCTCCAACGTGATGGTCTTGCCCGTAAGCGTC 1108543 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 1108542 TTGACGAAGATCTGCATG 1108525 >seq298 Length=714934 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| || || || || |||||| || || ||||| || ||| Sbjct 385371 GTAGACTCCTTCTGAATGTTATAGTCAGACAGGGTGCGACCGTCTTCGAGCTGCTTGCCA 385312 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | || |||||||||||||| ||||| ||||| || ||| ||| ||| Sbjct 385311 GCAAAGATAAGACGTTGCTGATCGGGAGGGATGCCTTCCTTATCTTGGATCTTCGCCTTC 385252 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | | || || || | ||| | ||| || ||||| || || Sbjct 385251 ACGTTATCAATAGTGTCAGAAGATTCCACCTCAAGGGTGATCGTCTTCCCGGTGAGGGTC 385192 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || ||||| ||||||||| || Sbjct 385191 TTGACAAAGATCTGCATGCCT 385171 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| |||||||| | ||||| ||| || || || || ||||| | Sbjct 385822 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCGAGTTGCTTGCCAGCAAA 385763 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | ||||| || ||||| || || |||||||||||| || ||| |||| | Sbjct 385762 GATAAGGCGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTCGCTTTGACATT 385703 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | |||||| | ||||||||| | ||| | || |||||||| || || || || Sbjct 385702 GTCAATGGTGTCAGATGACTCGACTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTCAC 385643 Query 127102 AAAAATCTGCAT 127113 || || ||||| Sbjct 385642 GAAGATTTGCAT 385631 >seq367 Length=894951 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | |||||||| ||||| || ||||| |||| Sbjct 540822 CCACCACGGAGACGGAGCACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTG 540763 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||||||||||||| |||||||| Sbjct 540762 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGAGGG 540703 Query 127007 AT 127008 || Sbjct 540702 AT 540701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497102981280