Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq298 123 3e-23 seq433 122 1e-22 seq367 93.3 5e-14 >seq298 Length=714934 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| || || ||||||||||| || ||||| |||| ||| Sbjct 385611 ACGAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCG 385552 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| || | ||||| || |||| || | || ||||||||| Sbjct 385551 AGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGA 385492 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | || | |||| ||| || || || | ||||| || || Sbjct 385491 ATCTTCGCCTTAA-CGTTGTCAATGGTGTCAGACGACTCGACCTCGAGGGTGATTGTCTT 385433 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || |||||||||||||| Sbjct 385432 GCCAGTAAGAGTCTTCACAAAGATTTGCAT 385403 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || ||||| || || ||||||||| | || ||||| |||||||| Sbjct 385827 GTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCGAGTTGCTTGCCA 385768 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | |||||| ||||||| || | | |||||||||| |||||| ||| Sbjct 385767 GCAAAGATAAGGCGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTCGCTTTG 385708 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||||| || || || |||| |||||||| ||||| || || || Sbjct 385707 ACATTGTCAATGGTGTCAGATGACTCGACTTCCAGGGTGATGGTCTTGCCGGTAAGGGTC 385648 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||||||||| Sbjct 385647 TTCACGAAGATTTGCAT 385631 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || ||||| | ||| |||||| || || || ||||| || Sbjct 385401 CCTCCGCGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGAC 385342 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| |||||||||||||| || || || | || ||||| |||| || Sbjct 385341 AGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATAAGACGTTGCTGATCGGGAGGG 385282 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| || ||||||| ||| | | | | ||||| |||||||| Sbjct 385281 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACGTTATCAATAGTGTCAGAAGATTCCACC 385222 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || || || || || || || |||||||| ||||| Sbjct 385221 TCAAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGCAT 385175 >seq433 Length=1580550 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || || |||||| | || ||||||||||| || ||||| Sbjct 1108261 CTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCCTCGAGCTGCTTTCCAGCGAA 1108202 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || |||||||||| || | || |||||||||| |||||| |||| | Sbjct 1108201 GATCAGACGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTT 1108142 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| || || || || | || ||||| |||||||| || || || || Sbjct 1108141 ATCGATGGTATCGGAAGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGGGTCTTGAC 1108082 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 1108081 GAAGATCTGCAT 1108070 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || || || ||||| || || || | || ||||| ||||||||||| || Sbjct 1108488 TCCTTCTGAATGTTATAATCGGAGAGGGTACGACCATCCTCGAGTTGCTTGCCGGCAAAA 1108429 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || ||||| | || | || ||||||||| |||||| ||| | | Sbjct 1108428 ATGAGACGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTG 1108369 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | |||||||| ||||| || || || || || Sbjct 1108368 TCGATGGTGTCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACG 1108309 Query 46583 AAGATTTGCATT 46594 |||||||||||| Sbjct 1108308 AAGATTTGCATT 1108297 >seq367 Length=894951 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| |||||||||||| ||||||||| || ||||| | Sbjct 540811 ACGGAGCACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCC 540752 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || || ||||||||||||||||| ||||| ||||||||||||| Sbjct 540751 ATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGG 540708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234005271440