Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq98 102 7e-17 seq406 96.9 3e-15 >seq98 Length=51396 Score = 102 bits (112), Expect = 7e-17 Identities = 234/347 (67%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 ||||||||||||| |||| || ||| || | |||||| ||| || || |||| | Sbjct 20892 CTTTGGGGTTCCAAGCGCTCATGATAATTCTCCTGTCGGTTGGATTCGTCTTGATTTTCT 20833 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTG 30159 | | | || || || || || ||| || |||||||| || | || ||| Sbjct 20832 CGATACATTCGTGTAGTTGGTCGACGCCCTGGCCAGAGTAGTCATGGTCGCA-GTCGACA 20774 Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 || || | ||| || || | ||| ||||| || || || ||||| | || |||||| | Sbjct 20773 TATTCAGTTCCAAAGTGTCGCCATTGGAAGCCATATACGGGTCCTAAATCGCCCTCTCGC 20714 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 ||||| | | || ||||| |||||||| || | || ||||| | ||||||||||| Sbjct 20713 CTGTGACCCAGCCCTCTCTTCTCCAAAAACTCCTTCGAGCCGTTCCCATCCCAGATCTTG 20654 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTG-TGGACCCTCTGACGAACCACAGCAGCTC 30338 || || ||||| || ||| ||| || | | | |||| | || ||||| |||||||| Sbjct 20653 ACGCCTTTCTCCGAAAGCAGTTTCGAATCGGTTCGACCAT-GCACAAACCATAGCAGCTC 20595 Query 30339 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 || | | | | |||| |||||| ||||| || || |||| Sbjct 20594 TTCAATAATGCCACGTAAAAACGTCCTCTTTGTCGTCAGAAGAGGAA 20548 >seq406 Length=30602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 || || |||||||| || | ||| ||||| || || || ||||| | || |||||| | Sbjct 14836 TATTCAGCTCCGAAGTGTCGCCATTGGAAGCCATATACGGGTCCTAAATCGCCCTCTCAC 14895 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 || || | | || ||||| |||||||| ||| | || ||||| ||||||||||||| Sbjct 14896 CTATGACCCAGCCCTCTCTTCTCCAAAAACTCTTTCGAGCCGTTCACGTCCCAGATCTTG 14955 Query 30280 ACCCCCTTCTCGGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 || |||||||| || ||| ||| | | | |||| | || ||||| |||||||| Sbjct 14956 ACGCCCTTCTCAGAAAGCAGCTTCGAATCGATTCGACCAT-GCACAAACCATAGCAGCTC 15014 Query 30339 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 || | ||| | | |||| ||| || ||||| || || |||| Sbjct 15015 TTCAATAACGCCACGCAAAAACGTCCTGTT-GTCGTCAGAAGAGGAA 15060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614502423206