Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq177 96.9 1e-14 seq433 86.0 2e-11 >seq177 Length=145142 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||| |||||| || || | | ||||| ||||| | ||||| | ||||||| Sbjct 35824 TTTCGTACGGTACCGTCGTAGCACACCATAACATCTTCGAGGGCCTTGACAAGACGACGC 35765 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || || |||||||| || || || || ||||||||||| | ||| |||||||| || Sbjct 35764 TGGATGTAACCAGTCTCAGCAGTCTTAACGGCTGTATCAATCAAACCTTCACGACCAGCC 35705 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || || |||||||| | ||| | || || || | | | | ||| |||| ||||| Sbjct 35704 ATGGCGTGGAAGAAGAACTCCTGAGGAGTAAGGCCGCGCAGATACGAGTTCTCGACGAAC 35645 Query 302719 CCACGCGCCTCGGG--CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGT 302765 || || | |||||| ||| |||| |||||| || || |||||||| Sbjct 35644 CCTCGGGACTCGGGGCTGAA--GTCGTCCTTGGTGAAATGAGGCAGGGT 35598 >seq433 Length=1580550 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 |||||||| | | ||||||||| || || | || || |||| ||| | || Sbjct 547982 CACACATGAAGACGATAAGCATCACTAGCATCGAAAAGACGTTCCTTCAAGAATCCAGCA 548041 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||| || || |||||||||||||||||||| || |||||||| |||||||| || ||| Sbjct 548042 ATACCATGCGAGATCATACAATCACGCTCCATCTCTCCGAAACGCAGACCACCGTCACGA 548101 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 | || || ||||||| ||||||||| Sbjct 548102 CTACGGCCTTCCACAGGCTGTCGAGTGAGA 548131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471805870533614