Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq412 96.9 3e-14 seq177 89.7 4e-12 >seq412 Length=416704 Score = 96.9 bits (106), Expect = 3e-14 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| ||||| ||||||||||| ||||| | || | || | || ||| | ||| Sbjct 396085 ACGAGACGGTTATCGAAATCTTCACCACCCAAGTGGGTGTCACCAGCGGTGGCTTTGACT 396026 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || ||||| | | ||| || | ||||| ||||| || || | ||| Sbjct 396025 TCGAAGATACCCTCTTCGATGGTCAACAGGGATACATCGAAAGTTCCTCCTCCGAGATCG 395966 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 ||||| || || || || | || || || ||||| || || | ||||| Sbjct 395965 AAAATGAGGACGTTTCGCTCGCCGGTGACCTTCTTGTCGAGACCGTAGGCGATGGCAGCG 395906 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 ||||| || || || || || | | ||| || | ||||| || | || || || || Sbjct 395905 GCAGTAGGCTCGTTGATGATACGGAGAACGTTCATACCAGAGATGGTACCGGCGTCCTTG 395846 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 |||||||| | ||| || ||||| || || ||||||||||| Sbjct 395845 GTGGCTTGACGTTGGGAGTCGTTGAAGTAGGCAGGAACAGT 395805 >seq177 Length=145142 Score = 89.7 bits (98), Expect = 4e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || || |||||||| | |||||||||||||||||| | ||| ||||||| |||| ||| Sbjct 35685 GAGTTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATTGATACAGCCGTTAAGACT 35744 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTA 435244 ||||| |||||||| || || | ||||||||| || |||||| ||| Sbjct 35745 GCTGAGACTGGTTACATCCAGCGTCGTCTTGTCAAGGCCCTCGAAGATGTTA 35796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740599862428572