Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq370 158 2e-33 >seq370 Length=376741 Score = 158 bits (174), Expect = 2e-33 Identities = 356/532 (67%), Gaps = 11/532 (2%) Strand=Plus/Plus Query 39631 ATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 ||| | |||||| || | ||| |||| ||||| || || || | ||| ||||| | || Sbjct 249697 ATGCATGCCCTCGTCGCGACTGATTAGCTCGTTGGAGAAAGTCAATCCTGGCATCAATCC 249756 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 |||||| | | |||||| ||||||||||| ||||| ||||| || |||||||| ||||| Sbjct 249757 TCGCTTTCTCATCCAAAAGATGGCAGCAAAGGATCCTGAAAAAAAAATGCCTTCCACTGC 249816 Query 39751 TGCAAATGCAACAAGTCTCTCTCCGTAACT-----TGTATCATTATGTATCCACTTCTGT 39805 ||| || |||||||| | ||||| || | ||| || || ||||| ||| | Sbjct 249817 TGCGAAAGCAACAAG--CCGCTCCGAAAATGCGGATGTCTCGGTAGAAATCCATTTCAAT 249874 Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT 39865 ||||| || || || | ||| | | |||| || ||||| || || |||||| | | Sbjct 249875 GCCCATTCTGCCTTTTGCTTGATAGAAGGAATGGTTTCGATCGCCCGGAAGAGAAAGTCC 249934 Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 ||| ||| ||| || | || || || |||| || |||| || || || | Sbjct 249935 CGTTCGTCAGGATCCTTGATGTAAGTGTCAATTAGGAGGGAATACGCCTCGGAGTGCACA 249994 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 ||||| ||| || ||||| || || ||||| | || || | ||| || || || Sbjct 249995 TTTTCGATCATAATTTGAAAACCATAGAAACAACGGGCCTCCGCAATCTGCACTTCACTC 250054 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 | || | |||| | | || || || || || ||||| || |||||| || || | Sbjct 250055 GAGAAGCGTTCCACAAGGTTCTCGTTGACAATGCCATCCGAAGAGGCAAAGAACGCGAGA 250114 Query 40046 ACATGTTTAATAAAATATTTTTCATCGG--GTGTCAATTTATTCCAGTCATTGATATCTT 40103 || | || || | ||| ||| ||||| || ||||||| | |||| | Sbjct 250115 ACGCGCGAAAGGAAGTGGCGTTC--CGGATCTGTCAGGTTCATCCAGTCCCAGGTATCAT 250172 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 |||| || | |||||| | ||||| ||||| |||| |||||| ||||| Sbjct 250173 GCGATAAGTCAATTTCTTCGACAGTCCAGAACGAAGCCTGTGCCTTCTTGTA 250224 Score = 109 bits (120), Expect = 8e-19 Identities = 243/364 (67%), Gaps = 3/364 (1%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| || |||||| || || ||| | ||| ||||| | || || | |||||||| Sbjct 251836 AACAGTAGGCAGGCAAAATCGGTATGCATGCCTTCATCACGGCTGATGAGCTCGTTAGAG 251777 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 ||||| | || ||||| ||||||||||| || | ||| || |||| || ||||| || Sbjct 251776 AATGTCAAGCCGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAGCCG 251717 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||| ||||| || || || || || ||||| || | || | | | | || Sbjct 251716 GAGAAGAAAATGCCCTCCACAGCAGCGAAGGCAACTAGACGTTCGGCAAAGGTAGACTCT 251657 Query 39788 TTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 |||| ||||| | | ||||| || ||||||||||| | ||||| || || || Sbjct 251656 TTATCGGAGATCCAGGTGAGAGCCCAGTCGGCTTTCTTCTTGATGCAAGGGATAGTGTCA 251597 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 | || | ||||| || | | | || || | || || || || | ||| Sbjct 251596 ACGGCGTCGAAGAGGTATTCGCGCTGGGCGGGGTCCTTGATGTAGGTGTCGATAAGCAGG 251537 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 || | |||||||||||||| || ||| || || || || || ||||||| ||| Sbjct 251536 GAGTATGTCTCTGAATGGATGTTCTCCATCATGATTTGGAAACCATAGAAACATCGTGCC 251477 Query 39965 TCAG 39968 |||| Sbjct 251476 TCAG 251473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903459284080