Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01-
26] 622 sequences; 33,316,483 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq370 172 4e-38
>seq370
Length=376741
Score = 172 bits (190), Expect = 4e-38
Identities = 270/384 (70%), Gaps = 12/384 (3%)
Strand=Plus/Minus
Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990
|| || || ||||| ||||| ||||||||| || |||||| | || || || |||
Sbjct 250035 GAGGCCCGTTGTTTCTATGGTTTTCAAATTATGATCGAAAATGTGCACTCCGAGGCGTAT 249976
Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050
|| || || || || |||||||| ||| |||| | | | || |||
Sbjct 249975 TCCCTCCTAATTGACACTTACATCAAGGATCCTGACGAACGGGACTTTCTCTTCCGGGCG 249916
Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA 44110
|| ||||| | ||| | || || || || ||||| ||||| | |||||||| |||
Sbjct 249915 ATCGAAACCATTCCTTCTATCAAGCAAAAGGCAGAATGGGCATTGAAATGGAT---TTCT 249859
Query 44111 AATGATTC-------TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163
| || | |||| | || || ||||| || || |||| ||||||||||||||
Sbjct 249858 ACCGAGACATCCGCATTTTCG-GAGCGGCTTGTTGCTTTCGCAGCAGTGGAAGGCATTTT 249800
Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223
||||||||||| ||||| ||||| |||||| | | || ||||| |||||||| || ||
Sbjct 249799 TTTTTCAGGATCCTTTGCTGCCATCTTTTGGATGAGAAAGCGAGGATTGATGCCAGGATT 249740
Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
||| || || || ||| |||| ||||| || || ||| | ||| ||||||||||||| |
Sbjct 249739 GACTTTCTCCAACGAGCTAATCAGTCGCGACGAGGGCATGCATACCGATTTTGCTTGCCT 249680
Query 44284 GTTACTTGGATATCT-AGGAGACG 44306
| | ||| ||||| ||||||||
Sbjct 249679 GCTGCTTACTTATCTCAGGAGACG 249656
Score = 125 bits (138), Expect = 6e-24
Identities = 243/357 (68%), Gaps = 9/357 (3%)
Strand=Plus/Plus
Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990
|| ||||||||||| ||||| || ||||| || || || || ||||| || | |||
Sbjct 251475 GAGGCACGATGTTTCTATGGTTTCCAAATCATGATGGAGAACATCCATTCAGAGACATAC 251534
Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAAT 44047
|| || || || || |||||||| || | || ||| || | || |
Sbjct 251535 TCCCTGCTTATCGACACCTACATCAAGGAC---CCCGCCCAGCGCGAATACCTCTTCGAC 251591
Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107
|| | || || | ||| || || | ||||| |||||||| || | |||||
Sbjct 251592 GCCGTTGACACTATCCCTTGCATCAAGAAGAAAGCCGACTGGGCTCTCACCTGGATCTCC 251651
Query 44108 TCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164
|| || ||| |||| ||||| || || || || || | |||||| |||||||||
Sbjct 251652 GATAAAGAGTCTACCTTTGCCGAACGTCTAGTTGCCTTCGCTGCTGTGGAGGGCATTTTC 251711
Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224
|| || || || || || |||| || ||||| ||||| || ||| | ||||| || |||
Sbjct 251712 TTCTCCGGCTCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCTTG 251771
Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281
|| || || || ||| | || || |||||||||||| | ||| ||||||||| |||
Sbjct 251772 ACATTCTCTAACGAGCTCATCAGCCGTGATGAAGGCATGCATACCGATTTTGCCTGC 251828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397452987035110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |