Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq370 172 4e-38 >seq370 Length=376741 Score = 172 bits (190), Expect = 4e-38 Identities = 270/384 (70%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || || || ||||| ||||| ||||||||| || |||||| | || || || ||| Sbjct 250035 GAGGCCCGTTGTTTCTATGGTTTTCAAATTATGATCGAAAATGTGCACTCCGAGGCGTAT 249976 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 || || || || || |||||||| ||| |||| | | | || ||| Sbjct 249975 TCCCTCCTAATTGACACTTACATCAAGGATCCTGACGAACGGGACTTTCTCTTCCGGGCG 249916 Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA 44110 || ||||| | ||| | || || || || ||||| ||||| | |||||||| ||| Sbjct 249915 ATCGAAACCATTCCTTCTATCAAGCAAAAGGCAGAATGGGCATTGAAATGGAT---TTCT 249859 Query 44111 AATGATTC-------TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 | || | |||| | || || ||||| || || |||| |||||||||||||| Sbjct 249858 ACCGAGACATCCGCATTTTCG-GAGCGGCTTGTTGCTTTCGCAGCAGTGGAAGGCATTTT 249800 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||||||||||| ||||| ||||| |||||| | | || ||||| |||||||| || || Sbjct 249799 TTTTTCAGGATCCTTTGCTGCCATCTTTTGGATGAGAAAGCGAGGATTGATGCCAGGATT 249740 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| || || || ||| |||| ||||| || || ||| | ||| ||||||||||||| | Sbjct 249739 GACTTTCTCCAACGAGCTAATCAGTCGCGACGAGGGCATGCATACCGATTTTGCTTGCCT 249680 Query 44284 GTTACTTGGATATCT-AGGAGACG 44306 | | ||| ||||| |||||||| Sbjct 249679 GCTGCTTACTTATCTCAGGAGACG 249656 Score = 125 bits (138), Expect = 6e-24 Identities = 243/357 (68%), Gaps = 9/357 (3%) Strand=Plus/Plus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || ||||||||||| ||||| || ||||| || || || || ||||| || | ||| Sbjct 251475 GAGGCACGATGTTTCTATGGTTTCCAAATCATGATGGAGAACATCCATTCAGAGACATAC 251534 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAAT 44047 || || || || || |||||||| || | || ||| || | || | Sbjct 251535 TCCCTGCTTATCGACACCTACATCAAGGAC---CCCGCCCAGCGCGAATACCTCTTCGAC 251591 Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107 || | || || | ||| || || | ||||| |||||||| || | ||||| Sbjct 251592 GCCGTTGACACTATCCCTTGCATCAAGAAGAAAGCCGACTGGGCTCTCACCTGGATCTCC 251651 Query 44108 TCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 || || ||| |||| ||||| || || || || || | |||||| ||||||||| Sbjct 251652 GATAAAGAGTCTACCTTTGCCGAACGTCTAGTTGCCTTCGCTGCTGTGGAGGGCATTTTC 251711 Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 || || || || || || |||| || ||||| ||||| || ||| | ||||| || ||| Sbjct 251712 TTCTCCGGCTCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCTTG 251771 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || || || || ||| | || || |||||||||||| | ||| ||||||||| ||| Sbjct 251772 ACATTCTCTAACGAGCTCATCAGCCGTGATGAAGGCATGCATACCGATTTTGCCTGC 251828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452987035110