Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coprinopsis_20strossmayeri_20[genbank_20GCA_5F900156845.1_202017-01- 26] 622 sequences; 33,316,483 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq298 181 3e-40 seq433 170 6e-37 seq412 168 2e-36 >seq298 Length=714934 Score = 181 bits (200), Expect = 3e-40 Identities = 181/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | || || ||||| ||||||||||| || ||||| |||| Sbjct 385409 TTTGCATACCTCCGCGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGAATGTTAT 385350 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || || ||||| || || || ||||||||||| ||||||||||||| Sbjct 385349 AGTCAGACAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATAAGACGTTGCTGAT 385290 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || ||||| ||||| || || || || || || |||||||| | ||||| | Sbjct 385289 CGGGAGGGATGCCTTCCTTATCTTGGATCTTCGCCTTCACGTTATCAATAGTGTCAGAAG 385230 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| || | ||||| ||||| || || || ||||| |||||||| Sbjct 385229 ATTCCACCTCAAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGCAT 385175 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| ||||||||||| || ||||| || | Sbjct 385637 TTTGCATACCACCACGGAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGAATGTTGT 385578 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || || || || ||||| ||||| ||||| || |||| Sbjct 385577 AGTCGGAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGAT 385518 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || |||||||| || || || || || ||||| | ||||| | Sbjct 385517 CGGGGGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCAATGGTGTCAGACG 385458 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||| || || || || || ||||| || ||||| Sbjct 385457 ACTCGACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTCTTCACAAAGATTTGCAT 385403 Score = 147 bits (162), Expect = 7e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||| || ||||| || |||||||| | || ||||||||||| | Sbjct 385837 CAAG-TGGAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGCCCATCTTCGA 385779 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 |||| || ||||||||||| || || || || || || ||||| || || || ||||||| Sbjct 385778 GTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGAA 385719 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || ||||| ||||| ||||| | ||||||| || ||||| || || | ||||| | Sbjct 385718 TCTTCGCTTTGACATTGTCAATGGTGTCAGATGACTCGACTTCCAGGGTGATGGTCTTGC 385659 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || || || ||||| Sbjct 385658 CGGTAAGGGTCTTCACGAAGATTTGCAT 385631 >seq433 Length=1580550 Score = 170 bits (188), Expect = 6e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||||||||| | | |||||||| || || || ||||| || ||||| || ||||||| Sbjct 1108982 TACCACCACGGAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAG 1108923 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | | || || ||||||||||| ||||| || || ||||| ||||| || |||||||| | Sbjct 1108922 AGAGCGTACGACCATCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGTTGATCAGGGG 1108863 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 |||| ||||| ||||| ||||| ||||| || ||||| ||||| | || || | ||| | Sbjct 1108862 GAATACCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATTGTGTCGGAAGATTCGA 1108803 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | ||||| || || || || || || || |||||||| Sbjct 1108802 CCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1108754 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | ||||||||||| || ||||||||||| || || || || || Sbjct 1108756 CATACCGCCACGGAGGCGAAGAACAAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTC 1108697 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || |||||||| || || || |||||||| ||||| |||||||| || ||||| Sbjct 1108696 AGAGAGGGTGCGCCCATCCTCTAGCTGCTTTCCAGCGAAGATCAGACGTTGTTGGTCAGG 1108637 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || || || ||||||||||| | || |||| || Sbjct 1108636 AGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTATCAATGGTGTCGGATGACTC 1108577 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||| || || || || || || || |||||||| Sbjct 1108576 CACCTCCAACGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 1108526 Score = 163 bits (180), Expect = 9e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | |||||||| ||||| || ||||| || || ||||| | Sbjct 1108304 TTTGCATTCCACCCCGCAGACGGAGAACAAGGTGAAGGGTTGACTCCTTCTGGATATTGT 1108245 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || |||||||| || || || |||||||| ||||| ||||||||||| | Sbjct 1108244 AGTCAGACAGGGTGCGCCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGGT 1108185 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || ||||| || || ||||| || ||||| || | ||| || | Sbjct 1108184 CGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTATCGATGGTATCGGAAG 1108125 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || |||| ||||| || || || || || || || |||||||| Sbjct 1108124 ACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1108070 >seq412 Length=416704 Score = 168 bits (186), Expect = 2e-36 Identities = 453/690 (66%), Gaps = 2/690 (0%) Strand=Plus/Plus Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACC 350026 ||||| || ||||||| || ||||| |||||||| || | || || ||||||||||| Sbjct 396209 CGTCGTCTCCGAACTGCTTGCGAACGCGCTAAGCGAACCCTCTCTTCCGCTACCCAAACC 396268 Query 350027 TCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCT 350086 || || ||||| || ||||| ||||| | || || | | | || |||| ||||| Sbjct 396269 TCAATCGAAATCGACTCTCTGTTCGATGGTATTGACTTTTATACTTCCCTTACCCGTGCC 396328 Query 350087 CGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTA 350146 || || || ||| | || ||||||||| || || | || || || || ||||| Sbjct 396329 CGTTTCGAGGAACTGTGCCAGGATCTTTTCCGAAGCACCCTCGAGCCCGTCGAGAAAGTC 396388 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | || | || || ||| | | | | ||| | ||| | |||||||| || Sbjct 396389 CTTCGTGACTCTAAGATCGACAAGGCTAACGTCCACGAAATCGTTCTCGTTGGTGGCTCC 396448 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT-C 350265 || ||||| || || || | | || || || || |||||||| || || | Sbjct 396449 ACCCGTATCCCTCGTATTGTCAAGCTCGTTTCCGACTTCTTCAATGGCAAGGAGCCCAAC 396508 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 ||| || | || || ||||| || || || || |||||||| || || || |||| | Sbjct 396509 AAGAGCA-TCAACCCCGATGAGGCCGTCGCCTACGGTGCTGCCGTCCAAGCTGCTATCCT 396567 Query 350326 ATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 ||||| ||| | || | | | || | | || || || || |||| || || Sbjct 396568 CTCTGGTGATACCTCTGAGAAGACTCAAGACTTGCTGCTCCTTGACGTTGCTCCTCTCTC 396627 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGT 350445 || || | || || |||||| || ||||| | ||| || |||| | ||||| Sbjct 396628 CCTCGGTATCGAGACAGCTGGTGGTGTCATGACCGCTCTCATCAAGCGAAACACCACTGT 396687 Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAAT 350505 ||||| || |||||| ||| ||| || || | || || || || |||| || || Sbjct 396688 CCCTACCAAGAAGTCCGAAATTTTCTCCACCTACGCCGACAACCAACCAGGTGTGCTCAT 396747 Query 350506 TCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTAC 350565 |||||| | || ||||| ||||||||||| || || || || || || | || Sbjct 396748 TCAAGTCTACGAGGGTGAGCGTGCTCGCACCAAGGACAACAACTTGCTCGGCAAGTTCGA 396807 Query 350566 CCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATAT 350625 || || || || || || | || |||||||| || |||||| | |||||||| Sbjct 396808 GCTGTCTGGCATCCCTCCCGCTCCCCGTGGCGTTCCTCAAATCGAAGTCACCTTCGATAT 396867 Query 350626 TGATTCAAATGGTATTTTAAATGTTACCGC 350655 |||| | |||||||| || ||||| |||| Sbjct 396868 TGATGCCAATGGTATCTTGAATGTCTCCGC 396897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515242324369466