Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crepidotus_20sp._20BD-2015_20[genbank_20GCA_5F001179765.1_202015-07- 08] 182,032 sequences; 70,257,325 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq177628 181 1e-40 seq571 116 4e-21 >seq177628 Length=4820 Score = 181 bits (200), Expect = 1e-40 Identities = 326/471 (69%), Gaps = 4/471 (1%) Strand=Plus/Plus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 || |||||| | || | || ||||| |||||| || | |||||||| | |||||| Sbjct 2957 TTCAGATGTGTGAAGAGCAAGCATGCAAAATCGGTGTGCATGCCCTCGTCGCGGCTGATG 3016 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 || || || || |||||||| || ||||| || || || || | ||| || || | | Sbjct 3017 AGCTCATTCGAGAATGTCAATCCCGGCATAAGCCCCCGCTTTTTGATCCAGAAAATGGAG 3076 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 || || ||||| |||||||||||||| || |||| || || || | || || ||||| Sbjct 3077 GCAAATGACCCTGAAAAGAATATACCTTCAACGGCCGCGAAAGCCACCAAGCGCTCGGCA 3136 Query 17123 TACGTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCA 17181 | || | ||||| ||| ||||| || | |||| || ||||| |||| || || Sbjct 3137 AAGGTGGAACGTTTGTC-CGAGATCCACTTGAGAGCCCAGTCAGCTTTGCGCTTGATACA 3195 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACG 17240 ||||| || | ||| | || | | ||| ||| | ||| || ||||||| Sbjct 3196 TGGGATCGTCTCCACGGCATCGAACAGATACTCCCGTTCA-GCAGGATCACGAATATACG 3254 Query 17241 TATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT 17300 | |||||||| || |||| | |||||||| ||||| ||||| || ||||| || | Sbjct 3255 TGTCGATGAGGAGCGAGTACGTCTCGGAGTGAATGTTTTCCATCATGATTTGAAAACCAT 3314 Query 17301 AAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGT 17360 | ||||| |||||||| || |||||||| |||| || ||| || || |||| Sbjct 3315 AGAAGCAGCGGGCTTCTGCGGCCTGAACTTCGCTTGAGAAACGCTCCAGGAGGTTCTCGT 3374 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 | ||||||||||| |||||||| || ||||| | ||| ||| |||| Sbjct 3375 TGACGATGCCGTCCGAGGCGGCGAAGAAGGCCAAGACATGGGAAATAAAAT 3425 >seq571 Length=811 Score = 116 bits (128), Expect = 4e-21 Identities = 250/374 (67%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 ||||| || |||||| || |||||||| | ||| || | || ||||| || || || Sbjct 3 GTCAATCCTGGCATCAGACCCCGTTTCTTGAGCCAGAACACGGCAGCGAAAGAGCCTGAG 62 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| |||||||| || | || || || | | || || || | || |||| | Sbjct 63 AAGAAGATACCCTCCACCGCCGCGAAAGCCACGAGGCGCTCCGCAAAAGTGGCGTGCCCG 122 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | ||||| ||| | |||||||||| || | | | | ||| || || || || | Sbjct 123 TCGGTGATCCACTTCACCGCCCACTCGGCCTTGTTCCTGACGCACTCGATGGTCTCGACC 182 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || || | || | ||| ||| | || | | || || ||||| || ||| | Sbjct 183 GCGTTCAGCAAGCGGTGTTTCTCCACAGGATCCCTGACGTAAGTGTCGATTAGCAGGGAG 242 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 || |||||||||| | ||||||||| ||||| |||||||| ||||| || || || Sbjct 243 TAAGTTTCGGAGTGAACGTTCTCCATCATAATCTGGAATCCGTAGAAGCAGCGAGCCTCA 302 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 || || ||||| | ||| ||| | | || |||||||| |||||||| || Sbjct 303 GCGCACTGCACTTCATTGGCGAACCGTGCTACAAGGTTTTCGTTGACGATGCCATCCGAG 362 Query 17378 GCGGCGAAAAACGC 17391 ||||||||||| || Sbjct 363 GCGGCGAAAAAAGC 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516367976741760