Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crepidotus_20sp._20BD-2015_20[genbank_20GCA_5F001179765.1_202015-07- 08] 182,032 sequences; 70,257,325 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq177628 127 3e-24 seq571 87.8 2e-12 >seq177628 Length=4820 Score = 127 bits (140), Expect = 3e-24 Identities = 309/465 (66%), Gaps = 5/465 (1%) Strand=Plus/Plus Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625 |||| | || | ||| ||||| |||||| ||||| |||||||| | || || | || Sbjct 2962 ATGTGTGAAGAGCAAGCATGCAAAATCGGTGTGCATGCCCTCGTCGCGGCTGATGAGCTC 3021 Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685 || || || || | ||| ||||| || || |||||||| | ||| || ||||| || || Sbjct 3022 ATTCGAGAATGTCAATCCCGGCATAAGCCCCCGCTTTTTGATCCAGAAAATGGAGGCAAA 3081 Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGC-AAAGGCAATAAGTCTCTCTCCATAAC 33744 ||| || |||||||| || ||||| || || || |||| || ||| | ||| || | Sbjct 3082 TGACCCTGAAAAGAATATACCTTCAACGGCCGCGAAAGCCACCAAG-CGCTCGGCAAAGG 3140 Query 33745 CGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 33801 || | |||| |||||||| ||||||| || || || || | ||| || | Sbjct 3141 TGGAACGTTTGTCCGAGATCCACTTGAGAGCCCAGTCAGCTTTGCGCTTGATACATGGGA 3200 Query 33802 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 33861 |||| || | ||||| || ||||| | |||| | ||| || ||| || |||| Sbjct 3201 TCGTCTCCACGGCATCGAACAGATACTCCCGTTCAGCAGGATCACGAATATACGTGTCGA 3260 Query 33862 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33921 | | || ||| | || || ||||||||||| || || ||||| || ||||| | Sbjct 3261 TGAGGAGCGAGTACGTCTCGGAGTGAATGTTTTCCATCATGATTTGAAAACCATAGAAGC 3320 Query 33922 ATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33981 | | || || | ||| ||||| | | || || || | || || || || | Sbjct 3321 AGCGGGCTTCTGCGGCCTGAACTTCGCTTGAGAAACGCTCCAGGAGGTTCTCGTTGACGA 3380 Query 33982 TTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 | || || ||| || || || ||||| ||||| ||||||| Sbjct 3381 TGCCGTCCGAGGCGGCGAAGAAGGCCAAGACATGGGAAATAAAAT 3425 >seq571 Length=811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 241/369 (65%), Gaps = 3/369 (1%) Strand=Plus/Plus Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 ||| ||||| || || || || || ||||| || | || |||||| || || || ||||| Sbjct 8 TCCTGGCATCAGACCCCGTTTCTTGAGCCAGAACACGGCAGCGAAAGAGCCTGAGAAGAA 67 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATG 33757 ||| || || || || || || || | || | ||| || || |||| | ||| Sbjct 68 GATACCCTCCACCGCCGCGAAAGCCACGAGGCGCTCCGCAAAAGTGGCGTGCCCGTCGGT 127 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 |||||||| ||||| |||||||| || | || || || || || | || || Sbjct 128 GATCCACTTCACCGCCCACTCGGCCTTGTTCCTGACGCACTCGATGGTCTCGACCGCGTT 187 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 | | || ||| || | ||| | || ||||| ||||| | || || | Sbjct 188 CAGCAAGCGGTGTTTCTCCACAGGATCCCTGACGTAAGTGTCGATTAGCAGGGAGTAAGT 247 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| || |||| ||| || || ||||| ||||||||||| || | |||||| | Sbjct 248 TTCGGAGTGAACGTTCTCCATCATAATCTGGAATCCGTAGAAGCAGCGAGCCTCAGCGCA 307 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||||||||| | || ||| || | | ||||| || || || ||||| ||| || Sbjct 308 CTGCACTTCATTGGCGAACCGTGCTACAAGGTTTTCGTTGACGATGCCATCCGAGGCGGC 367 Query 33998 AAAAAACGC 34006 ||||| || Sbjct 368 GAAAAAAGC 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628384513032960