Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crepidotus_20sp._20BD-2015_20[genbank_20GCA_5F001179765.1_202015-07- 08] 182,032 sequences; 70,257,325 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq166344 179 7e-40 seq2044 111 3e-19 seq171348 100 5e-16 seq179421 98.7 2e-15 seq181666 87.8 3e-12 seq174776 87.8 3e-12 >seq166344 Length=400 Score = 179 bits (198), Expect = 7e-40 Identities = 282/401 (70%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 268394 CCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCC 268453 |||||| | ||||| ||||||||||| | ||| |||||||| || |||| || || ||| Sbjct 400 CCACGTCGCGGGCTTTCGTGGTTGAACAAGATACCGTTGCAAGCATACATCCCGTACGCC 341 Query 268454 TCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGT 268513 ||||| ||||| || || ||||||| || | | ||| || |||| || || ||| Sbjct 340 TCACGATAGTTGACAACGATCCAGTACGCGTAGAGCTTCGCGCAGCCGTAGGGGGAGCGT 281 Query 268514 GGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAG 268573 || | ||| || || || | |||||| | ||| || ||||| | ||||| || Sbjct 280 GGGTAGAACGGGGTGGTCTCGCTCTGAGGGGTCTCTACAACCTTGCCGTAAAGCTCAGAA 221 Query 268574 GTCGATGCTTGGTAGAA-CTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAG 268632 ||||| || || ||||| | || ||||||||| |||||| | || | || ||||| Sbjct 220 GTCGAAGCCTGATAGAAGCGGACGTG-TTTTTCGAGGCCGCAGGTGCGCACGGCGTCGAG 162 Query 268633 CAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACAC 268692 | || || || || | ||| || ||||| | || ||||| | ||||||||| || || Sbjct 161 AAGGCGCAGCGTGCCGAGGCCGTCGACGTCGCCGGTGTACTCAGCCATCTCGAACGAGAC 102 Query 268693 CTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCACGAT 268752 || ||| ||| ||| ||||| ||||| |||| ||| || | |||||| | ||| Sbjct 101 CTTGACGTGGGACTGCGCGCCGAGGTTGTAAATCTCGGTGGGCTGCACCTGCGCGATGAT 42 Query 268753 CTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 | ||||| || || |||| | || || |||||||||| Sbjct 41 GTAGACGAGATTGGTGCTGTCGCTCAGATCGCCGTAGTGCA 1 >seq2044 Length=134 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 68328 AATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 || ||||| | || ||||| || || || || |||||||| |||||||| ||||||||| Sbjct 134 AAGATGAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTGACG 75 Query 68388 GCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447 ||||| ||||| | || || || |||| |||||||| || || ||||||||||| Sbjct 74 TTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATGGTCTTGCCGGTGAGGGTCTTC 15 Query 68448 ACGAATATCTGCAT 68461 ||||| |||||||| Sbjct 14 ACGAAGATCTGCAT 1 >seq171348 Length=246 Score = 100 bits (110), Expect = 5e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || ||||||||||||||||| ||||| ||| ||||||||||| | || || || || Sbjct 109 CCCTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCA 50 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||||||| || || ||||| ||||| ||||| ||||||||| Sbjct 49 AGGGTGATGGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCATT 5 >seq179421 Length=8220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || ||||||||||| || ||||||||||| ||||||||||| | || || || || Sbjct 1675 CCCTCCTTGTCTTGGATTTTTGCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCG 1734 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || ||||| |||||||||||||| |||||||| Sbjct 1735 AGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 1778 >seq181666 Length=17563 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || ||||| ||||| ||||| |||||||| |||||||| || | ||||| || || Sbjct 121 CCCTCCTTATCTTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACCTCG 180 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | ||||||||| || || || || ||||||||||| || |||||| || Sbjct 181 AGGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAGATTTGCATTGTG 228 >seq174776 Length=2373 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 ||||||||| |||||| ||| || | ||||| || || ||||| || || || ||||| Sbjct 133 GAGCCATGCGACGTTGACGACATCAAGATGGTTGGTCGGCTCGTCGAGCAGGAGAATGTC 192 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || | ||| |||||||| | | | ||||||||| ||||| || || |||||||| Sbjct 193 GGCGCGGAAGAGCATGGCGCGGGCCAAGGCCAGCTTCATCTTCCACCCACCAGACAGGGA 252 Query 225634 GCCGAT 225639 |||||| Sbjct 253 GCCGAT 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919525340391040