Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crepidotus_20sp._20BD-2015_20[genbank_20GCA_5F001179765.1_202015-07- 08] 182,032 sequences; 70,257,325 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq180125 100 3e-16 seq177628 89.7 5e-13 >seq180125 Length=1791 Score = 100 bits (110), Expect = 3e-16 Identities = 135/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 52649 CGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTT 52708 |||||||||||| | ||| | ||||||||||| | ||||||| ||||||||||||| Sbjct 1608 CGCGCTGCCGGTTGGGCTCATCGGCATGAACGCCACGCTCATGTGCCAGTACATCGAGTT 1549 Query 52709 TGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCCAAAGTACTTCAACGCTCGCAATC 52767 ||| || || || || | || ||||| | | ||||| || ||| | |||| | Sbjct 1548 TGTCGCTGACCGCCTCCTAGTCGCTCTCGGCAACGATAAAGT-CTACAATTC-GGCAAAC 1491 Query 52768 CGTTT-GAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGA 52826 | ||| || || ||| | | ||||| || | |||||||| ||||||||||||||||| Sbjct 1490 CCTTTCGATTTCATGGATATGATTTCCCTGCAAGGCAAGACGAACTTTTTCGAGAAGCGC 1431 Query 52827 GTC 52829 ||| Sbjct 1430 GTC 1428 >seq177628 Length=4820 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 52649 CGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTT 52708 ||| || || ||||| || | |||||||| || | |||||| ||||||| || || Sbjct 2827 CGCACTTCCCGTCGACCTCATTGGCATGAATGCCAAACTGATGTGCCAGTACATTGAATT 2768 Query 52709 TGTGGCGGATCGTCTGTTGGT-GCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATC 52767 |||||||||||| || | || ||| || ||| | |||| | | |||| ||||| Sbjct 2767 TGTGGCGGATCGCCTTCTCGTCGCA-CTTGGGAACGAAAAGGTGTACCACGCATCCAATC 2709 Query 52768 CGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAG 52827 | || || || ||| ||| || ||||| | || || ||||||||||| |||||||| | Sbjct 2708 CTTTCGACTTCATGGACATGATCTCGCTGCAAGGGAAAACCAACTTTTTTGAGAAGCGGG 2649 Query 52828 T 52828 | Sbjct 2648 T 2648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495133204535040