Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crepidotus_20sp._20BD-2015_20[genbank_20GCA_5F001179765.1_202015-07- 08] 182,032 sequences; 70,257,325 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq181131 181 1e-40 seq178742 113 6e-20 seq174077 87.8 2e-12 seq181855 84.2 3e-11 >seq181131 Length=2697 Score = 181 bits (200), Expect = 1e-40 Identities = 252/353 (71%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 1762 TCAAAGTCCTCACCACCCAAGTGGGTGTCACCGGCGGTGGCCTTGACCTCGAAGATACCC 1703 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || ||||| || || || || || || || || ||||| ||| Sbjct 1702 TCCTCGATGGTCAGGAGGGACACATCGAAGGTTCCTCCTCCGAGATCGAAGATGAGGACG 1643 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | ||||| ||||||||||| ||||| || || || || || || Sbjct 1642 TTGCGCTCGCCGACGACCTTCTTGTCGAGACCGTAGGCGATGGCGGCAGCGGTGGGCTCG 1583 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || ||||| ||||| || ||| | || || || || || || || Sbjct 1582 TTGATGATCCGGAGGACGTTCATGCCAGAGATGGTTCCGGCGTCCTTGGTGGCCTGACGC 1523 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| |||| ||| | | ||||| Sbjct 1522 TGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTGTTGATAGTGGTGCCGAGG 1463 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || ||| | || ||||| ||| ||| ||||| || || ||||| || Sbjct 1462 TACGACTCTGCGGTCTCCTTCATCTTGAGAAGGACCATGGAGGAGATCTCCTC 1410 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| |||||||||| || ||| || || || || || ||||||||||| || || Sbjct 1147 GTGTTAATGGGGTTCATTGCGACTTGATTTTTTGCGGCATCGCCGATAAGACGCTCGTTG 1088 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | | | |||| |||||| || ||||| || || || || |||||||| || || || Sbjct 1087 T---CGGAGAACGAGACGTAGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCGATGATC 1031 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||||||||| |||||||| Sbjct 1030 TCAACACGATCGTTTTGCCAGACACCGACGCA 999 >seq178742 Length=39985 Score = 113 bits (124), Expect = 6e-20 Identities = 187/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || ||||| | ||||| || || ||||| || ||||| | || | ||| Sbjct 23115 TCAAAGTCCTCTCCACCAAGATGTGTGTCACCGGCGGTGGCCTTGACAGCGAAAACACCA 23174 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| || | | |||||||| || || || ||||| || || |||||||| ||| Sbjct 23175 CCGCTAATATTCAGAAGGGAAACATCGAAAGTTCCTCCACCAAGATCGAAAATGAGGACG 23234 Query 7577 TTCGTATCGTCGTCTTTGTT--CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | ||| | ||||| | | || |||||||| || || || || || || || | Sbjct 23235 TTTTTTTCGGC--CTTTGATTGCCGGTCAAGACCGTAGGCAATGGCGGCGGCGGTGGGCT 23292 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || ||||| ||| | || || || || | | |||||||| || || | | Sbjct 23293 CGTTGATGATACGCAGAACATCGAGACCGGCGATGGCACCAGCATCTTTAGTGGCCAGAC 23352 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | ||||||||||| |||||||| ||||| Sbjct 23353 GCTGCGAATCGTTGAAGTAGGCGGGGAC 23380 >seq174077 Length=14717 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 7593 TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGAC 7652 ||| ||| ||||| ||||| |||| |||||| ||||| ||||| || || | || ||| Sbjct 12178 TGTCCTTGTCGAGTCCGTATGCGAGAGCCGCTGCCGTAGGTTCGTTGATCACCCGGAGAA 12237 Query 7653 AGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAA 7710 || || |||||||| |||| || || || || ||||||||||| | ||||| || Sbjct 12238 CGTCAAGACCAGCAATC--TGCCCGGCGTCCTTGGTGGCTTGTCGTTGTGCGTCGTTGAA 12295 Query 7711 GTAGGCCGGGACCGTTACGACCGC 7734 ||| || ||||| || | ||| || Sbjct 12296 GTATGCAGGGACGGTGATGACAGC 12319 >seq181855 Length=50147 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/259 (67%), Gaps = 9/259 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||||||||| |||||||| || || || ||||| || ||| ||||| | || Sbjct 24984 TCGAAATCTTCACCTCCCAAGTGCGTGTCTCCTGCGGTAGCGAGGACCTCAAACACGCCG 25043 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | ||| || ||||| || || || || || ||| | | || | Sbjct 25044 TCCTCGATGGAGAGGAGCGAGACGTCAAAAGTTCCGCCTCCAAGATCATAGACAAGGATT 25103 Query 7577 TTCGTATCG---TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| ||| | |||||||| ||| ||||| |||| || || || || ||| Sbjct 25104 CTCGACTCGGGTCCATCTTTGTT------GAGGCCGTAGGCGAGCGCGGCGGCGGTAGGT 25157 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | || || ||| ||| ||||| || || || |||| || || || || Sbjct 25158 TCGTTCAGGATTCGGAGAACGTTGAGGCCGGCGATCGTCCCCGCGTCCTTGGTTGCGGTG 25217 Query 7694 CGTTGCGAATCGTTAAAGT 7712 ||||| | |||||| |||| Sbjct 25218 CGTTGGGCATCGTTGAAGT 25236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633687618826880