Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crepidotus_20sp._20BD-2015_20[genbank_20GCA_5F001179765.1_202015-07- 08] 182,032 sequences; 70,257,325 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq181166 114 1e-20 seq177628 107 2e-18 seq181727 96.9 4e-15 seq154043 84.2 2e-11 seq36003 84.2 2e-11 >seq181166 Length=959 Score = 114 bits (126), Expect = 1e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 |||||| ||||||||||||||| ||||| ||||| |||||||||||| |||||| | Sbjct 381 GGGCCTCCGCAACTCCCTGCTCACCGCGCCGATGCCGACCGCGTCGACGAGCCAGATCCT 440 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587 || ||||||||| |||||||||||||||| |||||||||| ||| || Sbjct 441 CGGGAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACACGCGGCG 491 >seq177628 Length=4820 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 12/203 (6%) Strand=Plus/Plus Query 74457 TTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTC 74516 ||||||||||| |||||||| |||||||||||||| ||||||| || |||||| | Sbjct 2633 TTTGAATAATCTGATACCCGCTTCTCAAAAAAGTTGGTTTTCCCTTGCAGCGAGATCATG 2692 Query 74517 TCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCC 74573 ||||| |||||||||| || ||| ||| | ||| || ||||| |||| Sbjct 2693 TCCATGAAGTCGAAAGGATTGGATGCGTGGTACA---CCTTTTCGTTCCCAA---GTGCG 2746 Query 74574 ATG---AGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCG 74630 | | ||||||||||||||||||| ||||||||| ||| | |||| |||||| Sbjct 2747 ACGAGAAGGCGATCCGCCACAAATTCAATGTACTGGCACATCAGTTTGGCATTCATGCCA 2806 Query 74631 ATGAGTTTGCACGGCAGTGCCTC 74653 ||||| | | || ||||| || Sbjct 2807 ATGAGGTCGACGGGAAGTGCGTC 2829 >seq181727 Length=3334 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 118172 GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCC 118231 || || ||||||||| | | || || || || || ||||| || || ||||| || || Sbjct 2018 GCCTCGCGAACGTTGAGGAGTTTCCCGCGGAGAGGGAACACACCGAAGTTGTCGCGCCCA 1959 Query 118232 ACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGA 118291 ||||||||||| ||||||||||| || | ||| || ||||| ||||| || | ||| || Sbjct 1958 ACAACGCTCAAACCGGCAATAGCGAGCGACTTGGCGGAGTCTCCCTCAGTGAGAATGAGG 1899 Query 118292 GTGCACTC 118299 ||||| || Sbjct 1898 GTGCAGTC 1891 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 152938 GCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCT 152997 || || ||||| ||| | | || || ||||| || ||||| ||||| || ||| || Sbjct 2018 GCCTCGCGAACGTTGAGGAGTTTCCCGCGGAGAGGGAACACACCGAAGTTGTCGCGCCCA 1959 Query 152998 ACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGC 153057 |||||||||| |||||||||||| || | || || ||||| ||||| |||| ||| || Sbjct 1958 ACAACGCTCAAACCGGCAATAGCGAGCGACTTGGCGGAGTCTCCCTCAGTGAGAATGAGG 1899 Query 153058 GTACAGTC 153065 || ||||| Sbjct 1898 GTGCAGTC 1891 >seq154043 Length=111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 53572 CGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAA 53631 |||||||||||||||||| |||||||||||||| | |||||| | || ||||| ||| Sbjct 111 CGCCATCTACCTCGAGCCATGGCACGCCGACATATTCGAGTTTATTGACCTGCGCAAGAA 52 Query 53632 TCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||| || | || |||||||| ||| ||| |||| Sbjct 51 TCATGGGAAGGAGCAGATGCGCGCCCGAGACTTGTT 16 >seq36003 Length=139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| | ||||||||| || || || | ||||||||| || || ||| || Sbjct 40 AAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGCACAAAGTCGTCCGGCGTGGGTTG 99 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGC 159041 || |||||| |||||||| |||||||||| || |||| Sbjct 100 CTGAAGCATGCGCCACATGCCCTCGACGTAGTCGCGCGC 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545970864713600