Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crepidotus_20sp._20BD-2015_20[genbank_20GCA_5F001179765.1_202015-07- 08] 182,032 sequences; 70,257,325 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq181166 113 5e-20 seq2044 102 9e-17 seq177628 95.1 1e-14 seq181666 86.0 7e-12 seq181727 84.2 2e-11 seq161514 82.4 9e-11 >seq181166 Length=959 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 80695 TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATC 80754 ||||||| ||||| || | | ||||||||| ||||||||||| ||||||| | |||| Sbjct 209 TCGAACGGCAAGCGCAGCGCGAGGAACACGTCCGCCAGGCCCTGGACGCCGACGCCGATG 150 Query 80755 GGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATG 80814 || ||||||||| ||||||| ||| || ||| || || ||||| |||| |||||| Sbjct 149 GGCCGGTGGCGCATGTTCGAGCGCCGGGTCTCGGGGATGGGGTAGTAGTTGACGTCGATG 90 Query 80815 ACGCGGTTCAGGTTG 80829 | |||||| |||||| Sbjct 89 ATGCGGTTGAGGTTG 75 >seq2044 Length=134 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||||| Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTGGAGGTCGAGTCCTCG 60 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || |||||||||||||||||||| || || |||||| Sbjct 61 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAG 120 Query 27526 CAGCGTCTAATTTT 27539 ||||| || || || Sbjct 121 CAGCGCCTCATCTT 134 >seq177628 Length=4820 Score = 95.1 bits (104), Expect = 1e-14 Identities = 242/368 (66%), Gaps = 9/368 (2%) Strand=Plus/Minus Query 64504 GATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAAAGTATT 64563 || |||||| | |||| || || | ||||||| | ||| | | |||| ||| Sbjct 3345 GAAGTTCAGGCCGCAGAAGCCCGCTGCTTCTATGGTTTTCAAATCATGATGGAAAACATT 3286 Query 64564 CATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGAT 64623 || ||||||||| |||||| | || |||| || | |||| ||||||| || ||| Sbjct 3285 CACTCCGAGACGTACTCGCTCCTCATCGACACGTATATTCGTGATCCTGCTGAACGGGAG 3226 Query 64624 GGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATC 64683 |||||| || | ||||| | || | | | || ||||| ||||| || Sbjct 3225 TATCTGTTCGATGCCGTGGAGACGATCCCATGTATCAAGCGCAAAGCTGACTGGGCTCTC 3166 Query 64684 CGGTGGATG------AATCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGT 64737 |||||| || ||| || | |||| |||| | | ||||| || Sbjct 3165 AAGTGGATCTCGGACAAACGT---TCCACCTTTGCCGAGCGCTTGGTGGCTTTCGCGGCC 3109 Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || ||||| || |||||||| |||||||| || ||||||||| | ||||||||||| Sbjct 3108 GTTGAAGGTATATTCTTTTCAGGGTCATTTGCCTCCATTTTCTGGATCAAAAAGCGGGGG 3049 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 || ||||| || || | || ||||| ||||| ||| || |||||||| | ||| Sbjct 3048 CTTATGCCGGGATTGACATTCTCGAATGAGCTCATCAGCCGCGACGAGGGCATGCACACC 2989 Query 64858 GAATTTGC 64865 || ||||| Sbjct 2988 GATTTTGC 2981 >seq181666 Length=17563 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| ||||| |||||||| || || || ||||| || || Sbjct 225 AATGCAAATCTTCGTCAAGACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAATCCTC 166 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||| | ||| | |||||||| || || || |||||||| Sbjct 165 GGATACCATCGACAATGTCAAGGCTAAGATCCAAGATAAGGAGGG 121 >seq181727 Length=3334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 30328 GGAATTCCCATTAAGAAACACCCTACCGAAAAAATCTGGATCCCCGAACTCATTTTTGGG 30387 || |||||||| ||| ||| | ||||| || ||| ||||| ||||| || ||||| Sbjct 776 GGCATTCCCATCGAGATTCACTCCACCGAGAACGTCTACATCCCGGAACTGATCTTTGGC 835 Query 30388 CACCTTTTGACAAGCTCCAACTACAACGACGAGGAGCAGCGCGTGACGGGTGGACGAAAT 30447 || || | | | ||||||| | ||||||| ||| || | || || || || ||| Sbjct 836 CATCTCCTCGCGGGGTCCAACTTCGACGACGACGAGAAGAAGCTCACCGGGGGTCGCAAT 895 Query 30448 GGCTACGGTGCAAAGCTCGCCAAC 30471 ||||| ||||| |||||||||||| Sbjct 896 GGCTATGGTGCCAAGCTCGCCAAC 919 >seq161514 Length=192 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 ||||| ||||||||| || || ||| || || || || ||||| || || ||||| Sbjct 155 TTTGGCGAGCGTCTCGTCGCGTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGTTCATTT 96 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 || ||||||||| | || ||||| || || ||||| || || |||| ||||||||| Sbjct 95 GCGTCCATTTTCTGGATGAAGAAGCGCGGACTCATGCCGGGATTGACGTTCTCGAACGAG 36 Query 64828 CTGATCTCTCGGGACGAGGG 64847 || ||| || ||||| || Sbjct 35 CTCATCAGCCGCGACGAAGG 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569012715715840