Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq223 102 1e-16 >seq223 Length=304017 Score = 102 bits (112), Expect = 1e-16 Identities = 292/449 (65%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 54170 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229 ||||| || ||||| || |||||||| | ||||| |||||| || ||| ||| | | Sbjct 175528 CCAGGTCGCTTGTTACCGCCCTGATCGACGTATCGAGCGGTAGCATCGTAAGCTCGAAGC 175469 Query 54230 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 54289 || || | ||||| || || ||| ||||| |||| || || ||| |||| ||| Sbjct 175468 ATGGGGACGATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGATCCCTTGGCTCGA 175409 Query 54290 ATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 54349 || || ||| | || || || || || | || || || | || || || Sbjct 175408 ATGTTGTGAATGTTCAATCCAATACCGCCCGCAGTCTTGGAAATCATGGCACAAGTCTTC 175349 Query 54350 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 54409 || ||||| ||||| ||||| || || ||| ||||| | | || || ||| Sbjct 175348 AAGGTATCGTAGATTCCCTCAATCGAGTCGTCCTTCATGGCGACCAAGAAGCACGAGGAC 175289 Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469 | ||| | | ||| || || || || ||||| || || ||||| || || || Sbjct 175288 AACTGGGGGTGGGGAGTACCGGCGTTGAACAAGGTGGGCGAGGCGTGGGTGAAGTATCGC 175229 Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 54529 || || | || |||||||||||||| || || | || | || || || || Sbjct 175228 TCGGACATGAGGTTGTACGTCTCGATGACTTTCTCGACGTCTCGGCCGTGGATACCGACA 175169 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589 ||||| ||||| | ||| |||||||||| ||| ||||| || || ||| |||||| Sbjct 175168 GCGACTCGCATAATCATATGCTGAGGTCGTTCGGCGATCCTGCCGTCGATTCGGAGCAAG 175109 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAA 54618 || ||| || | || || ||||| || Sbjct 175108 TATGATCGCTCTAGGGTCTTGAAACCGAA 175080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715410452320