Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq829 91.5 2e-13 >seq829 Length=85973 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 145661 GGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719 |||||| | || | ||||| || || ||||| ||||||| | ||||||||||| || Sbjct 13895 GGCTCCCGTTCCAACTGGACCTGAAGCGGCTCGACGTGGTCCCGATAGACGTGCGCATCA 13954 Query 145720 CCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTC 145779 |||| | | ||||| || || || | | || | | | |||| ||||| || Sbjct 13955 CCCATTTGGAGAATGAACTCGTGCGGTTCCGTGTCGGTCATGAGTGCGATCATGTGTGTG 14014 Query 145780 AGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG 145839 || ||||||||| || |||||||||||||| || || || | ||| | || || ||| Sbjct 14015 AGTAGGGAGTAGGACGCGATGTTGAAGGGCACGCCGAGGCCGAGGTCGCATGAACGTTGG 14074 Query 145840 TACAGCTGGCAGGAGAG 145856 |||| | |||| ||||| Sbjct 14075 TACATCAGGCATGAGAG 14091 Score = 84.2 bits (92), Expect = 3e-11 Identities = 222/339 (65%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985 ||| ||||| ||| | | || || ||||||| | || || ||||||||| | || Sbjct 14254 CGGATTCCACGCGCTCATGATGATCCTCCTGTCCGTCGGATTGTTCTTGATCTTGTCAAT 14313 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGC 146045 || | | ||||| ||||| || | ||| ||||| || | | | |||| | Sbjct 14314 CACCTGCGCAAGCTGATCCACTCCTCGTCCCGTATAATCGTCCTCGCACGTCTTGTACTC 14373 Query 146046 GGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTG 146105 |||||||| ||||||||||||||||| || || || |||| || || | || || Sbjct 14374 TGCCCCGAAATGCCTCCACTGGAACCCATACACAGGGCCCAAATCACCTTCCCTCCGATG 14433 Query 146106 CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 || | || || | ||||| | |||| ||| || || | ||||||| | || | | Sbjct 14434 TCCTAATCCAACCTTGTCGAGGTACTCCCTGGATCCATTTCCCGCCCAGATGTGGATGTC 14493 Query 146166 CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAG 146225 | | ||| ||| || ||| || || || | || ||||||||| || || |||| Sbjct 14494 CTTTTCGGCGAGGAGCTTTCCGTCTGTCGATCCACGGACGAACCAGAGTAGTTCCTCGAC 14553 Query 146226 GACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 || || | |||||| | || ||||| || || || Sbjct 14554 TACGCCTCGGAGGAAGACTCGTTTTGTGGTGAGGAGCGG 14592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590070648449360