Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq20 125 7e-24 seq101 116 4e-21 seq334 100 3e-16 >seq20 Length=67849 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || ||||| |||| ||||| | | Sbjct 54075 ATGCAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCG 54134 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| ||||| | ||||| |||||||| || | ||||| Sbjct 54135 GACACCATTGACAACG-TCAAATCGAAAATCCAGGACAAGGAGGGCATTCCACCTGACCA 54193 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | || | ||| ||||| ||| |||| |||| || || || ||||||||| Sbjct 54194 GCAGCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGACGAACGCTTTCCGACTACAA 54253 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||| | || ||||| ||| | ||||| Sbjct 54254 CATCCAGAAGGAGTCGACTTTGCACTTGGTTTTGCGATTGCGAGGCGG 54301 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || |||||| | || |||||| | | Sbjct 53619 ATGCAAATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAGGTCGAATCTTCG 53678 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||||||||| |||||| | || || Sbjct 53679 GACACTATCGACAACG-TCAAGTCTAAGATTCAGGACAAAGAGGGTATCCCCCCTGATCA 53737 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| ||| || || || || || || | || || || ||||||||| Sbjct 53738 GCAACGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACACTTTCCGACTACAA 53797 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 53798 CATCCAGAAGGAGTCTACCTTGCA 53821 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || |||||| | || |||||| | | Sbjct 54303 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACGATCACCCTTGAAGTCGAATCTTCG 54362 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || |||| ||||| ||||||||||| | ||||| Sbjct 54363 GATACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 54421 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||||| || ||| |||| |||| || || | || ||||| Sbjct 54422 GCAACGGTTGATCTTTGCGGGAAAGCAGTTGGAGGACGGTCGAACTTTGTCGGATTACAA 54481 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | || || ||| | || ||||| Sbjct 54482 CATTCAGAAGGAGTCTACACTCCATTTGGTCTTGCG 54517 >seq101 Length=212447 Score = 116 bits (128), Expect = 4e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 |||||||| || ||||||||| |||| ||||| || | |||| | | | |||| |||| Sbjct 117978 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 117920 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| || || || || | || ||||| |||||||||| ||| || Sbjct 117919 GTCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGG 117860 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||||||| || || | || ||||| ||||||||||||||||||||| | || | Sbjct 117859 CAAACAGCTCGAAGATGGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTT 117800 Query 40890 GCA 40892 ||| Sbjct 117799 GCA 117797 >seq334 Length=295082 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 |||| ||||| || || |||||| | |||||||| ||| | |||| ||| ||||| ||| Sbjct 55785 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 55726 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 || || || | || ||||| |||||||||||||||||||||| | || |||| | Sbjct 55725 CTCGAAGATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 55666 Query 40897 GTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| | || || Sbjct 55665 GTCTTGCGATTGCGTGGTGG 55646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213828839840