Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 3e-12 >seq20 Length=67849 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| || || || || || || ||||| || ||| || | || ||||| ||||| Sbjct 54387 AAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAACGGTTGATCTTTGCGGGAAAG 54446 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || ||||| ||||||| || ||||| || ||||| || || || || | ||| Sbjct 54447 CAGTTGGAGGACGGTCGAACTTTGTCGGATTACAACATTCAGAAGGAGTCTACACTCCAT 54506 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || | ||||||||||| Sbjct 54507 TTGGTCTTGCGACTGCGAGGTGGTAT 54532 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || ||||| || || ||||| || || | | ||||| || |||||| Sbjct 53931 AAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAGCGTTTGATTTTCGCCGGAAAA 53990 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| ||||||| | || || || ||||| || ||||| ||||||||| Sbjct 53991 CAGCTTGAAGATGGTCGAACTCTGTCCGACTACAACATTCAGAAGGAATCGACTTTGCAT 54050 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | ||||| ||||| Sbjct 54051 TTGGTCCTTCGTCTCCGAGGAGGTAT 54076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755448124371200