Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq101 116 3e-21 seq20 116 3e-21 >seq101 Length=212447 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| |||||||| | |||||||| || || |||||||| || Sbjct 117772 ACCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGA 117831 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||| ||||||||||| || ||| ||||||| ||||||||||| ||||| Sbjct 117832 AAGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGG 117891 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || |||||||| || || || || | |||| |||||||| | |||||| Sbjct 117892 AATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 117951 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| ||| | || || || || || Sbjct 117952 CTCGAGGGTGATGGTCTTACCCGTGAG 117978 >seq20 Length=67849 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || || ||||||||||| ||| || ||| || ||| || Sbjct 54055 ACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCTTCA 53996 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| | || | ||||||||| || ||||| || || |||||||| Sbjct 53995 AGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 53936 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | |||| ||| || | |||||| || | ||| | ||| || Sbjct 53935 ATCTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTCTTT 53876 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || || |||||||| Sbjct 53875 CCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| ||||| |||| ||||||||| || |||||||||||||| Sbjct 54531 TACCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCG 54472 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || ||||| | ||| ||||| || |||| | || ||||| || || | Sbjct 54471 ACAAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCG 54412 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| ||| || || || | || | || |||| |||| Sbjct 54411 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGA 54352 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||| || ||||||| || || || || |||||||| Sbjct 54351 CTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||| ||| |||||||| | || ||||| || || |||||||| ||| Sbjct 54303 TACCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGG 54244 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || | ||| || |||||| | || | |||||||| || || | Sbjct 54243 AAAGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTG 54184 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| ||||| ||| || | || | |||||||| ||||| Sbjct 54183 GAATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGA 54124 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | || || || || || || || || || |||||||| Sbjct 54123 CTTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || || |||| || | ||||| || || || || |||||||||||||| Sbjct 53619 TACCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCG 53560 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || || || ||||| ||| |||| | || |||||||| || | Sbjct 53559 AGAGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGG 53500 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || || || | |||| ||||| | | ||||| Sbjct 53499 GAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGA 53440 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | |||| || | ||| || ||||| || || ||| Sbjct 53439 CTTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTT 53405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825990385128