Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq20 116 2e-21 seq101 84.2 1e-11 >seq20 Length=67849 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| | || |||| ||| ||||| || ||||| |||||||||||||| Sbjct 54301 CCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 54242 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| |||||||||||||| |||||||| | ||||||||||| || Sbjct 54241 AGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGA 54182 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || ||| | ||| | | | | || | || | || ||||| Sbjct 54181 ATGCCCTCCTTGTCCTGGAT-TTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGAC 54123 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || ||||| || || || ||||||||||| Sbjct 54122 TTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| || ||||| ||| ||||| ||||||||||||||||| || | || Sbjct 54058 AGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCT 53999 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || |||||||| | ||||||||||| || | | |||||||| Sbjct 53998 TCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 53939 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| |||| ||||| |||| || || || Sbjct 53938 TGGATCTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTC 53879 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| || || ||||||||||| Sbjct 53878 TTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| || | ||| || ||||| |||||||| || ||| Sbjct 54529 CCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGAC 54470 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 | || |||| ||||||||||| || || || || | ||| |||||||| | |||| Sbjct 54469 AAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGG 54410 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | || | ||| | |||||||| Sbjct 54409 -ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGAC 54351 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || ||||| | || || || ||||||||||| Sbjct 54350 TTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 84.2 bits (92), Expect = 1e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 34233 CGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCT 34292 |||| ||||||||||| || || || || | |||||||||||| ||| | || || | Sbjct 54754 CGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCTGGTCGGGGGGAATGCCTTCTT 54695 Query 34293 TGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGA 34352 |||| ||||| ||| | || | | |||| ||| | ||| ||||| |||| ||||| Sbjct 54694 TGTCCTGAATCTTCGACTTGACATTGTCAATCGTATCCGACGACTCGACTTCCAACGTGA 54635 Query 34353 TGGTTTTGCCGGTGAGAGT 34371 | || || ||||| ||||| Sbjct 54634 TAGTCTTTCCGGTCAGAGT 54616 >seq101 Length=212447 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||||||||| |||| ||| |||||| || ||||| ||||||||||| || Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 117832 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||| ||||| ||||| ||||| |||||||| || || Sbjct 117833 AGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGA 117892 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | || | || ||||| Sbjct 117893 ATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 117952 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368 || | |||||||| || || ||||| Sbjct 117953 TCGAGGGTGATGGTCTTACCCGTGAG 117978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068716175040