Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq223 129 1e-24 >seq223 Length=304017 Score = 129 bits (142), Expect = 1e-24 Identities = 269/397 (68%), Gaps = 3/397 (1%) Strand=Plus/Plus Query 248832 TTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAAT 248891 |||||| || || ||| ||| || | ||| ||| || |||| ||||| |||||| Sbjct 175085 TTTCAAGACCCTAGAGCGATCATACTTGCTCCGAATCGACGGCAGGATCGCCGAACGACC 175144 Query 248892 TCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCT 248951 |||||| ||| | |||||||| |||||||| || ||| ||| | |||| || | Sbjct 175145 TCAGCATATGATTATGCGAGTCGCTGTCGGTATCCACGGCCGAGACGTCGAGAAAGTCAT 175204 Query 248952 CGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||||||||||| | ||| || || | | || || ||| | || || | ||||| Sbjct 175205 CGAGACGTACAACCTCATGTCCGAGCGATACTTCACCCACGCCTCGCCCACCTTGTTCAA 175264 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 ||||||||| | || ||| || ||||||||| | | |||||| | |||||||| Sbjct 175265 CGCCGGTACTCCCCACCCCCAGTTGTCCTCGTGCTTCTTGGTCGCCATGAAGGACGACTC 175324 Query 249072 TGTCGACGGCATTTATGACACGCTTAAACAGACG-GCGAAGATTTCTAAATTCGCGGGCG 249130 | || || || || || || ||| || | | || | |||||| || ||||||| Sbjct 175325 GATTGAGGGAATCTACGATAC-CTTGAAGACTTGTGCCATGATTTCCAAGACTGCGGGCG 175383 Query 249131 GAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATG 249190 | || || | | | |||||| ||||| ||||| |||||||| ||||| || | Sbjct 175384 GTATTGGATTGAACATTCACAACATTCGAGCCAAGGGATCGTACATTGCCGGTACCAACG 175443 Query 249191 GGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTT 249227 | | | |||||||| ||| | |||||| |||| Sbjct 175444 GTTACTCGAACGGTATCGTCCCCATGCTTCGA-GCTT 175479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073754926134912