Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq20 131 1e-25 seq334 95.1 1e-14 seq101 84.2 2e-11 >seq20 Length=67849 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| || ||||||||||||||||||||| ||| ||| | || || Sbjct 54055 ACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCTTCA 53996 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||||||||| ||||| ||||| ||||| ||||| | || ||||||||| Sbjct 53995 AGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 53936 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | | || | ||| || |||| |||||||||||| Sbjct 53935 ATCTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTCTTT 53876 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || ||||||||||| || ||||| ||||| ||||| Sbjct 53875 CCGGTCAGAGTCTTGACGAAGATCTGCATACCGCCTC 53839 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| |||||||||||| ||| || | || || Sbjct 53827 ACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTTCGGCCATCTTCG 53768 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||||||||| ||||| || || || || || || | |||||| |||||| | Sbjct 53767 AGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGGATACCCTCTTTGTCCTGA 53708 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| | || ||||||| ||| || ||||| Sbjct 53707 ATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTCGACCTCCAAGGTGATTGTCTTT 53648 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||||||||| Sbjct 53647 CCGGTCAAGGTCTTGACGAAGATTTGCAT 53619 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| ||||| || |||||||||| || ||||||||| |||||||||||| Sbjct 54301 CCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 54242 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| |||| || || || ||||| ||||| ||||| ||||| || || Sbjct 54241 AGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGA 54182 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||||| || || | | | ||||| | ||| || Sbjct 54181 ATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGACT 54122 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || || ||||| || ||||| ||||| Sbjct 54121 TCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 102 bits (112), Expect = 6e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || || || ||||| || || || |||||||||||||||||| || | Sbjct 54529 CCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGAC 54470 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| ||| |||| |||| || ||||| || || |||||||| || ||||| || | Sbjct 54469 AAAGTT--CGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCG 54412 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||||||||| ||| || ||| || | | | ||| | || | Sbjct 54411 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGA 54352 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 | || | ||| |||||||| || |||| ||||| || ||||| ||||| ||||| Sbjct 54351 CTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCATACCGCCTC 54295 >seq334 Length=295082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||||| || |||||||||| || ||||||||| |||||||||||| | Sbjct 55646 CCACCACGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 55705 Query 45170 AG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || | ||| ||| ||| || || || |||||||| ||||| ||||| ||||| || Sbjct 55706 AGGGTTCGGCCATCTTCG---AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGG 55762 Query 45227 GGCACACCCTCCTTGTC 45243 || | ||| |||||||| Sbjct 55763 GGGATACCTTCCTTGTC 55779 >seq101 Length=212447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || || || |||||||||| || ||||||||| ||||||||||| Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 117832 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || ||||| |||||||| || | ||||| || || ||||| Sbjct 117833 AGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGA 117892 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | ||||| ||| ||| Sbjct 117893 ATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 117952 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAG 45315 || | ||| || ||||| ||||| || Sbjct 117953 TCGAGGGTGATGGTCTTACCCGTGAG 117978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071184307514