Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq223 167 2e-36 seq20 114 1e-20 >seq223 Length=304017 Score = 167 bits (184), Expect = 2e-36 Identities = 275/397 (69%), Gaps = 0/397 (0%) Strand=Plus/Minus Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 ||||| || || |||| ||| || ||||||||||||||||| || || || | ||| Sbjct 175537 GCAAAGGCACCAGGTCGCTTGTTACCGCCCTGATCGACGTATCGAGCGGTAGCATCGTAA 175478 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 ||| ||||| || |||| |||||| || ||| || || | ||| || Sbjct 175477 GCTCGAAGCATGGGGACGATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGATCCC 175418 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 || ||||||| |||||||| || || || || || || | | || || ||||| || Sbjct 175417 TTGGCTCGAATGTTGTGAATGTTCAATCCAATACCGCCCGCAGTCTTGGAAATCATGGCA 175358 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || |||| || |||||||| ||||| || ||| || || | ||||||||||| Sbjct 175357 CAAGTCTTCAAGGTATCGTAGATTCCCTCAATCGAGTCGTCCTTCATGGCGACCAAGAAG 175298 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 ||||| |||| || | | ||| ||| |||| ||||| || || |||||| || Sbjct 175297 CACGAGGACAACTGGGGGTGGGGAGTACCGGCGTTGAACAAGGTGGGCGAGGCGTGGGTG 175238 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836 ||||||| | ||||| || |||||||| |||||| | || | ||| ||||| Sbjct 175237 AAGTATCGCTCGGACATGAGGTTGTACGTCTCGATGACTTTCTCGACGTCTCGGCCGTGG 175178 Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 ||||||| ||||| ||||| ||||| | ||||||| Sbjct 175177 ATACCGACAGCGACTCGCATAATCATATGCTGAGGTC 175141 Score = 109 bits (120), Expect = 5e-19 Identities = 266/400 (67%), Gaps = 5/400 (1%) Strand=Plus/Minus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| |||||| || |||||||||| |||| || |||| ||||||| ||||| Sbjct 176679 GTAGATGTTGCTGGTATACGGTTCGAAGCATTCGTTCCAACCCAAGATCTGAGACGTCGA 176620 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACT 22611 ||||| ||||| || || | || |||||||||| ||| || ||| | || || Sbjct 176619 TGCGGTTGGCATGGGGGCAACTAGGAGCGAGTTTCGCAAACCAGTCTTGGCGATCTTGGC 176560 Query 22612 CTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 ||| | ||| ||||||||| ||| |||||| || | || |||| | |||||||| Sbjct 176559 CTTCAAGGTCGCCCAGTCCCAGAGAGAGGACGGGGTAA---TGCCCCAGAGGTCGTATTG 176503 Query 22672 CAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGC 22731 |||| ||| |||| || || ||||||||| || | ||| ||||| | | | || Sbjct 176502 CAACTTGCCTTGACTGGCAGGCGAGCCTTCGTAAGTCTGGTAAGGACCTTCAACTTCTGC 176443 Query 22732 AAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA 22791 | |||| | || || | ||| ||| || || || |||||||| | | ||| | Sbjct 176442 CATTTCGGAAGAAGCTTCGAGTGCGGCGTGGTAGATGGTTTCGAAGATCTGCACGTTGAG 176383 Query 22792 TTCGGCG-GCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATAC 22850 || | || || || | ||| | | ||| |||| | || ||| | || || | || Sbjct 176382 TT-GTCGAGCCTCGGGACCGTCGAAAGCCATTCGCAACGCCATGAAGGTATCGGCAAGAC 176324 Query 22851 CCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGA 22890 | ||||| || | ||| | || |||| | || ||||| Sbjct 176323 CTTGAACTCCGAGACCAACGGGACGGTGTCGCATGTTCGA 176284 >seq20 Length=67849 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || ||||| ||| | || || || || | Sbjct 53847 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACGATTACCTTGGAAGTCGAGTCGAGC 53906 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| |||| | | | ||| | |||||||||||| | || || ||||| Sbjct 53907 GATACCATCGACAACGTTAAGAGCAAGA-TCCAGGACAAGGAAGGAATTCCTCCTGACCA 53965 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || ||||| || |||||| | ||||| | ||| || ||| || || Sbjct 53966 GCAGCGTTTGATTTTCGCCGGAAAACAGCTTGAAGATGGTCGAACTCTGTCCGACTACAA 54025 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || ||||||||| | ||| |||| ||| | || | || |||| Sbjct 54026 CATTCAGAAGGAATCGACTTTGCATTTGGTCCTTCGTCTCCGAGGAGGTA 54075 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| |||| || || | || Sbjct 54075 ATGCAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCG 54134 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| || ||| ||||||||| ||| | || || |||||| Sbjct 54135 GACACCATTGACAACGTCAAATCGAAAATCCAGGACAAGGAGGGCATTCCACCTGACCAG 54194 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||||||||| |||||||||||| || | ||| || ||| Sbjct 54195 CAGCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGACGAACGCTTTCCGACTACAAC 54254 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || |||||| | || |||| | || || | ||||||| Sbjct 54255 ATCCAGAAGGAGTCGACTTTGCACTTGGTTTTGCGATTGCGAGGCGGTA 54303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31207 AAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAAC 31266 |||||| || || || || |||||||| |||| || || | ||||||| |||| | Sbjct 53405 AAAGACCCTCACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGACAA 53464 Query 31267 GGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATT 31326 ||||| | || |||||||||||| | || || || ||||| || | || || Sbjct 53465 TGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGATCTT 53524 Query 31327 CGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATC 31386 ||| || || || | ||||| | ||| | ||||| |||||||| || ||||| Sbjct 53525 CGCCGGAAAGCAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGAATC 53584 Query 31387 GACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || || |||| |||| Sbjct 53585 CACTCTCCACCTCGTCCTGAGGTTGCGGGGTGGTA 53619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761752885280