Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq20 100 3e-16 >seq20 Length=67849 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 |||||||| | || | ||| ||||| | |||||||| || || ||||| || ||| Sbjct 53845 CCGCCTCGGAGTCGGAGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 53786 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | |||||||| || || || || |||||| ||||||||||| || || Sbjct 53785 AGTGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGG 53726 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | || | | || | ||||| | | || || Sbjct 53725 ATACCCTCTTTGTC-CTGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTCGAC 53667 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||||| |||||||| || || ||||| ||||||||| Sbjct 53666 CTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATTTGCATA 53618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058828532800