Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555
.1_202015-11-17] 834 sequences; 24,807,186 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq20 104 2e-17
>seq20
Length=67849
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| ||||| | ||||| || ||||| | |||||| || || || ||||||||||| |
Sbjct 54529 CCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGAC 54470
Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| || |||| ||| || | || || || ||| |||||| |||||||| || || |
Sbjct 54469 AAAGT--TCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCG 54412
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| ||||| || ||||| ||| || || | | || | || |||| | ||| |
Sbjct 54411 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGA 54352
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|||||| || | |||||| |||||||| || || ||||| || ||||||
Sbjct 54351 CTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCATA 54302
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| ||||| | || | ||| || || | ||||| || || || |||||||| |||
Sbjct 53845 CCGCCTCGGAGTCGGAGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 53786
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | ||||||||||| || || || |||||| ||||||||||| || ||
Sbjct 53785 AGTGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGG 53726
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || |||||||| ||| || || | | || | ||||||| | ||| ||
Sbjct 53725 ATACCCTCTTTGTCCTGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTCGACC 53666
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | ||||| |||||||| || || ||||| |||||||||
Sbjct 53665 TCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATTTGCATA 53618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507009114374880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |