Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq829 84.2 3e-11 seq223 84.2 3e-11 >seq829 Length=85973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70333 CGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGAT 70392 |||| | |||||||| || ||||| ||||| || ||| || | | || |||||||| Sbjct 14062 CGACCTCGGCCTCGGCGTGCCCTTCAACATCGCGTCCTACTCCCTACTCACACACATGAT 14003 Query 70393 TGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGT 70452 || | ||| |||| | | || ||||||||||| | | | || || || || ||||| Sbjct 14002 CGCACTCATGACCGACACGGAACCGCACGAGTTCATTCTCCAAATGGGTGATGCGCACGT 13943 Query 70453 GTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAG 70503 ||| | ||| ||||||| | |||| || | |||||||||||||| Sbjct 13942 CTATCGGGACCACGTCGAGCCGCTTCAGGTCCAGTTGGAACGGGAGCCGAG 13892 >seq223 Length=304017 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 96901 CTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCA 96960 ||||||| ||||| | ||||||||||||||||| || || || || ||||| |||| | Sbjct 175585 CTATAGCA-TCTACCTCGAACCTTGGCACGCGGATGTCTTCGATTTCATCGACTTGCGAA 175643 Query 96961 AAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAG 97020 | ||| ||| ||||| | ||||| | |||||||| || || |||||| | || | Sbjct 175644 AGAACCACGGCAAGGAAGAAGTCCGAGCTCGAGACTTGTTCTACGCGCTCTGGATTCCGG 175703 Query 97021 ATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGT 97080 | |||| ||| || || | || ||| ||||| | ||||| ||| || || Sbjct 175704 ACATGTTTATGCGACGTGTAGAGTCCGATGGAGACTGGGCGTTGATGTGTCCCAACGAGT 175763 Query 97081 CACCCGGTCTGTCCGA 97096 ||||| ||||||| Sbjct 175764 GCCCCGGATTGTCCGA 175779 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 97991 TGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGT 98050 ||| |||||||||||||| ||| |||||| | || | | ||||||||||| || Sbjct 176793 TGGTTCCATTCAAAACATCCCCAACATCCCTGCGGAACTAAAGGGTATCTACAAGACCGT 176852 Query 98051 CTGGGAGATTCCGACCAAGACGC-TGATCGATATGGCTGCCGACAGAGGTGTCTACATTG 98109 ||||| || | | | | | || | |||||| | ||||| ||| |||| | || || | Sbjct 176853 TTGGGAAAT-CAGCCAGAAAGGCATCATCGATCTCGCTGCGGACCGAGGAGCCTTTATCG 176911 Query 98110 ACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGA 98169 | ||| |||||| |||| | || | || | || || ||| | || || | Sbjct 176912 ATCAGTCGCAATCGCTCAACATTCACATGACCAACCCTTCCATGGGTCAGCTCACGTCTA 176971 Query 98170 TACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAAC 98224 | ||||| |||| ||||| ||||| | ||||| ||||||||||| || |||| Sbjct 176972 TGCACTTCTACGGCTGGAAGAAGGGATTGAAGACCGGCATGTACTACTTGCGAAC 177026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051474457840