Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq101 118 2e-21 seq20 113 1e-19 >seq101 Length=212447 Score = 118 bits (130), Expect = 2e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| ||||| | || | || || ||||| || ||||| || || ||||| || Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 117832 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||| ||| ||||| || ||||| || || || || || | ||| ||||||||||| Sbjct 117833 AGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGA 117892 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTAC 104511 |||||||| || ||||| ||||| | || || || || | ||| || | ||| || || Sbjct 117893 ATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTC-CGAGGACTCGAC 117951 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||| || || || |||||||| || || Sbjct 117952 CTCGAGGGTGATGGTCTTACCCGTGAG 117978 >seq20 Length=67849 Score = 113 bits (124), Expect = 1e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104344 CCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC 104403 ||| || || || || | || ||||| |||||||| || || || || ||||||| ||| Sbjct 53606 CCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAGAGAGTTCGACC 53547 Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTT 104463 ||||| ||||| ||||| || || || | | || |||||||| || |||||||| || Sbjct 53546 ATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGAATTCCTTCCTT 53487 Query 104464 ATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 ||||||||||| | || ||||| || | || ||| | || || || || || || Sbjct 53486 GTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGACTTCGAGAGTGAT 53427 Query 104524 AGTCTTACCAGTAAGTGTTTTT 104545 ||||| || || || || ||| Sbjct 53426 CGTCTTTCCGGTGAGGGTCTTT 53405 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | |||||| || |||||||| || || || || | ||||| |||||| || | || Sbjct 54506 ATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGACAAAGTTCGACCGTCCTCCAACTG 54447 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||||| ||||| || | || || || ||||| || || || || || ||||||||||| Sbjct 54446 CTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTT 54387 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 | || || || || | ||||| || ||| || || || || || ||||| || || Sbjct 54386 GGACTTGACGTTGTCAATAGTATCCGAAGATTCGACTTCAAGGGTGATCGTCTTTCCGGT 54327 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || || || || |||||||| Sbjct 54326 CAAGGTCTTGACGAAGATCTGCAT 54303 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| || ||||| || || ||||| || || |||| || ||||| ||||| Sbjct 53821 TGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTTCGGCCATCTTCGAGTTGC 53762 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| || || || | | || |||||||| || || || ||||| ||||||||||| Sbjct 53761 TTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGGATACCCTCTTTGTCCTGAATCTTA 53702 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | || || || ||| ||||| | || || ||||| || || Sbjct 53701 GACTTGACGTTGTCGATAGTGTCCGAAGATTCGACCTCCAAGGTGATTGTCTTTCCGGTC 53642 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||| Sbjct 53641 AAGGTCTTGACGAAGATTTGCAT 53619 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| | ||| ||||||||||| | || ||||| ||||| || | | ||| || Sbjct 54773 TAGTCAGACAAAGTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCTGG 54714 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || || || |||||||| ||||||||||| | || ||||| || | ||||| Sbjct 54713 TCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTATCCGAC 54654 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 | || || || | || |||||||| || || || || Sbjct 54653 GACTCGACTTCCAACGTGATAGTCTTTCCGGTCAGAGT 54616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151386096588472