Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq20 123 2e-23 seq101 113 4e-20 seq334 91.5 1e-13 >seq20 Length=67849 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| | ||| | ||||||||||| ||||| ||||| || | ||| || ||| Sbjct 53845 CCGCCTCGGAGTCGGAGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCG--G 53788 Query 94841 ATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| | ||| || || || |||||| | ||||| |||| ||||||||| || | Sbjct 53787 AAAGTGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGG 53728 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| |||||||| | ||| || | ||||||| | ||| |||||| | |||| Sbjct 53727 GGATACCCTCTTTGTCCTGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTCGA 53668 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| || ||||| || | || || || ||||| ||||| Sbjct 53667 CCTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATTTGCAT 53619 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||||||||| |||||||||||||| || ||||| || | ||| || ||| Sbjct 54301 CCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGG-- 54244 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | || |||| ||| || || | || || |||| ||||| || || | Sbjct 54243 AAAGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTG 54184 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || ||||| | ||||| | |||||| | | | ||||| | |||| Sbjct 54183 GAATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGA 54124 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| || |||||||| || || || || ||||||||||| Sbjct 54123 CTTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 111 bits (122), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || |||| || |||||| ||||| || | ||||| ||||| || | Sbjct 54542 AAAAATCTGCATACCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAAT 54483 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| || ||| | || ||||||| ||| ||||| ||||||| || | | Sbjct 54482 GTTGTAATCCGACAAAGT--TCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGT 54425 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || || || || || || ||||| | ||| || | ||||||| | | | ||| Sbjct 54424 TGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTA 54365 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||||| |||| ||||| || ||||| || | || || || ||||||||| Sbjct 54364 TCCGAAGATTCGACTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGC 54305 Query 95006 AT 95007 || Sbjct 54304 AT 54303 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | || | ||||| |||||||| |||||||| || | ||| || ||| | Sbjct 54073 CCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 54014 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| | || ||| || |||||||||||| | || || || | ||||| || |||| Sbjct 54013 AGAGT--TCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAG 53956 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCG 94957 |||| ||||| ||||| | || || ||| ||| | ||| || || || | ||| Sbjct 53955 GAATTCCTTCCTTGTCCTGGATCTTGCTCTTAACGTTGTCGATGGTATC-GCTCGACTCG 53897 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || || ||||| || ||||| || || ||||||||||| Sbjct 53896 ACTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 >seq101 Length=212447 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || | ||| ||||||||||||||||| ||||| || | ||| || | | Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGT--CCG 117830 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| || ||| || |||||||| ||| | ||||| | || |||||||| |||| Sbjct 117831 AAAGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAG 117890 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | || || | ||||||| | ||| ||||| | | |||| Sbjct 117891 GAATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGA 117950 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAG 94986 | || | |||||||| || || || || Sbjct 117951 CCTCGAGGGTGATGGTCTTACCCGTGAG 117978 >seq334 Length=295082 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||||||||| |||||||||||||| || ||||| || | ||| || ||| | Sbjct 55646 CCACCACGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 55705 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || ||||| || ||| | ||||| |||| ||||| || || || Sbjct 55706 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 55765 Query 94901 ATACCTTCTTTGTCATAAAT 94920 |||||||| ||||| | ||| Sbjct 55766 ATACCTTCCTTGTCTTGAAT 55785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286526564240