Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq223 125 2e-23 >seq223 Length=304017 Score = 125 bits (138), Expect = 2e-23 Identities = 278/412 (67%), Gaps = 5/412 (1%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| || ||||||||| | ||||| || ||| | |||||||| ||| || || || Sbjct 175137 GAACGACCTCAGCATATGATTATGCGAGTCGCTGTCGGTATCCACGGCCGAGACGTCGAG 175196 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAA 363565 | || || || || || || | || | | | || ||||| |||||| |||| | Sbjct 175197 AAAGTCATCGAGACGTACAACCTCAT--GTCCGAGCGATACTTCACCCACGCCTCGCCCA 175254 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | ||| ||| || || |||| | || ||| |||| || ||||| | | |||| Sbjct 175255 CCTTGTTCAACGCCGGTACTCCCCACCCCCAGTTGTCCTCGTGCTTCTTGGTCGCCATGA 175314 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 ||||||| || || ||||| |||| || || | |||| |||||| | |||||||||| Sbjct 175315 AGGACGACTCGATTGAGGGAATCTACGATACCTTGAAGACTTGTGCCATGATTTCCAAGA 175374 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCG 363745 ||| ||||| ||||| | || ||||| |||| || || |||||| || Sbjct 175375 CTGCGGGCGGTATTGGATTGAACATTCACAACATTCGAGCCAAGGGATCGTACATTGCCG 175434 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || || |||||||| || | || ||||||||||| | | || ||| || Sbjct 175435 GTACCAACGGTTACTCGAACGGTATCGTCCCCATGCTTCGAGCTTACGATGCTACCGCTC 175494 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC-TATGTATC 363856 | |||||||| ||||| || ||||| || || ||||| ||||| || Sbjct 175495 GATACGTCGATCAGGGCGGTAACAAGCGACCTGGTGCCTTTGCGTATGTCTC 175546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303339672852188