Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq20 100 2e-16 seq101 93.3 4e-14 >seq20 Length=67849 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 || ||||| |||| || ||||||||||| || |||||| ||||| | ||||| Sbjct 53415 ACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGACAATGTCAAGTCC 53474 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||| ||||| || || || ||||| || || |||| | || ||| ||| Sbjct 53475 AAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGATCTTCGCCGGAAAG 53534 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 ||||| ||||||| ||| || ||||| |||||||| || ||||| || Sbjct 53535 CAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGAATCCAC 53587 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || ||||| | || ||| | || ||||| | Sbjct 53619 ATGCAAATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAGGTCGAATCTTCG 53678 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| |||||||| || || || || ||||| Sbjct 53679 GACACTATCGACAACGTCAAGTCTAAGATTCAGGACAAAGAGGGTATCCCCCCTGATCAG 53738 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||| |||||||||||||||| | ||| | ||| || ||| Sbjct 53739 CAACGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACACTTTCCGACTACAAC 53798 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 53799 ATCCAGAAGGAGTCTAC 53815 >seq101 Length=212447 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| || ||||||||||| | ||||| ||||| ||| Sbjct 117963 ATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCCAAGATCCAGGAC 117904 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || ||||| || ||||| ||||| ||| |||| || | || |||||| || ||||||||| Sbjct 117903 AAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGGCAAACAGCTCGAAGAT 117844 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 | ||| | | || || ||||| || || || ||||| | || || || || || Sbjct 117843 GGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTTGCACTTGGTCTTGAGG 117784 Query 24207 TTGAGAGGAGG 24217 || |||| || Sbjct 117783 CTGCGAGGTGG 117773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931629969270